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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : ndhF
DDBJ      :ndhF         putative NADH dehydrogenase
Swiss-Prot:NDHF_BACSU   RecName: Full=Probable NADH-quinone oxidoreductase subunit 5;         EC=1.6.99.5;AltName: Full=NADH dehydrogenase subunit 5;

Homologs  Archaea  13/68 : Bacteria  554/915 : Eukaryota  20/199 : Viruses  0/175   --->[See Alignment]
d.58.34
:505 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   233->307 2c1wA PDBj 5e-04 10.1 %
:RPS:SCOP  173->259 1qd1A2  d.58.34.1 * 3e-05 15.1 %
:RPS:PFM   194->341 PF00361 * Oxidored_q1 1e-08 33.8 %
:HMM:PFM   122->390 PF00361 * Oxidored_q1 1.4e-60 32.6 261/270  
:HMM:PFM   70->110 PF00662 * Oxidored_q1_N 8.5e-08 24.4 41/62  
:BLT:SWISS 14->505 NDHF_BACSU 0.0 100.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB11959.1 GT:GENE ndhF GT:PRODUCT putative NADH dehydrogenase GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION 205409..206926 GB:FROM 205409 GB:TO 206926 GB:DIRECTION + GB:GENE ndhF GB:PRODUCT putative NADH dehydrogenase GB:FUNCTION 16.10: Respire GB:NOTE Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId: 10658656, 15849754, 16850406, 17015645, 6816592, 7565865; Product type pe : putative enzyme GB:PROTEIN_ID CAB11959.1 GB:DB_XREF GOA:P39755 InterPro:IPR003916 SubtiList:BG10949 UniProtKB/Swiss-Prot:P39755 GB:GENE:GENE ndhF LENGTH 505 SQ:AASEQ MLVSLSLSSLLTLFFIMLMASGISGLLFLHPRVPLSFVRIHIGILALPLLVSLLILANSGVSGNVGPWHLDSLACLMTFFVLAIGFIIQRFSVRYLMGDRSYRKYFTLFTFTTGAASMTWLSGDLRLMVLFWGATLVGLTLLIRLNSAWQVASEAAKISGRLFLLSWFSLFFAMMWLFHATGQWQLSLVVTNESLAGLGEWERTGIQLLIVLAVIIPAAQWPFQRWLVESIVAPTPVSAIMHAGLVNAGGIILTRFSPLFHGGIASIILLLLASISVLIGTGISLVQVDYKRQLVGSTIGQMGFMLIQCALGAYIAAIIHLILHGLFKATLFLQAGSAVGRHEVSTRTNERTSYLWVMAGRILSLVIGVAFWLTAPGDGYHLISALILGWSLSVSWDQLVAFGEGRIGRIAGLTVLGGAALVYFIIHHLFYKWLHTTIFQSVQPPMSAVMIVVCLLLFGSALGTWVARHRSSVFFAVLYLWLVRLGEAKPKSVESHPDYLKQYIS GT:EXON 1|1-505:0| SW:ID NDHF_BACSU SW:DE RecName: Full=Probable NADH-quinone oxidoreductase subunit 5; EC=1.6.99.5;AltName: Full=NADH dehydrogenase subunit 5; SW:GN Name=ndhF; Synonyms=ybxE; OrderedLocusNames=BSU01830; SW:KW Cell membrane; Complete proteome; Membrane; NAD; Oxidoreductase;Quinone; Transmembrane. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 14->505|NDHF_BACSU|0.0|100.0|492/505| GO:SWS:NREP 6 GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| GO:SWS GO:0048038|"GO:quinone binding"|Quinone| GO:SWS GO:0016021|"GO:integral to membrane"|Transmembrane| TM:NTM 14 TM:REGION 6->28| TM:REGION 37->59| TM:REGION 70->92| TM:REGION 125->147| TM:REGION 157->179| TM:REGION 204->226| TM:REGION 229->251| TM:REGION 264->286| TM:REGION 309->331| TM:REGION 355->373| TM:REGION 378->400| TM:REGION 409->431| TM:REGION 445->467| TM:REGION 470->489| SEG 2->13|lvslslsslltl| SEG 42->56|igilalpllvsllil| SEG 162->172|lfllswfslff| SEG 262->280|ggiasiillllasisvlig| SEG 310->326|algayiaaiihlilhgl| RP:PDB:NREP 1 RP:PDB:REP 233->307|2c1wA|5e-04|10.1|69/273| RP:PFM:NREP 1 RP:PFM:REP 194->341|PF00361|1e-08|33.8|148/268|Oxidored_q1| HM:PFM:NREP 2 HM:PFM:REP 122->390|PF00361|1.4e-60|32.6|261/270|Oxidored_q1| HM:PFM:REP 70->110|PF00662|8.5e-08|24.4|41/62|Oxidored_q1_N| GO:PFM:NREP 3 GO:PFM GO:0008137|"GO:NADH dehydrogenase (ubiquinone) activity"|PF00361|IPR001750| GO:PFM GO:0042773|"GO:ATP synthesis coupled electron transport"|PF00361|IPR001750| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00361|IPR001750| RP:SCP:NREP 1 RP:SCP:REP 173->259|1qd1A2|3e-05|15.1|73/140|d.58.34.1| OP:NHOMO 739 OP:NHOMOORG 587 OP:PATTERN ----------------1-------1--112-1-----------11111-------------2-1---- 222111------1----11-1----111111------1---111-1112-------1-----11111213---------1-1111121----1---1--1-111--2221--------------1211112211223222211111211-1111111111111111-1111111111111111---11---1--22222222222222221221222121212-1------1--1111111111111121111----------------------------------------------------------------------1---1----------1-------1----1--1---11--------11---2111--112121111234323231111111111112-11211111111111121221112221--1231444322111111111111-11211111111111-1--11--1--1---1111--2---12222111111111112211111111111111-11221113221--121--1221221-------233211---------11111-2-21111111121-1-1-111111111-1111111111111122111-1--1----------------1-----1--2122-1-11111111111111111111-1111111111111111111111111111111111111111111111111111-1111111111111111111112222211-1---------------2222221111--22121-112111111111111111111----22212-----1221211222----111-111111------------------------------------------------1 ---------------------------------111-----------1------121------------------------------------1---11------1----------1-------1--------1---------1---------1-----------1-------1-1------------2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 69 STR:RPRED 13.7 SQ:SECSTR ########################################################################################################################################################################################################################################cccccEEEEcHHHHTTTcTHHHHH#HHHHHHHHcccccccccHHH#####HHHHHHHHHHHTTcHHHHHHHHHHH###################################################################################################################################################################################################### DISOP:02AL 1-3| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcc //