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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : sigL
DDBJ      :sigL         RNA polymerase sigma-54 factor (sigma-L)
Swiss-Prot:RP54_BACSU   RecName: Full=RNA polymerase sigma-54 factor;

Homologs  Archaea  0/68 : Bacteria  542/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.30.1
:436 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   382->433 2o8kA PDBj 5e-10 47.1 %
:RPS:PDB   355->424 2ahqA PDBj 5e-13 30.8 %
:RPS:SCOP  389->436 1m0tA1  c.30.1.4 * 1e-13 22.9 %
:RPS:PFM   76->262 PF04963 * Sigma54_CBD 1e-30 37.6 %
:RPS:PFM   276->433 PF04552 * Sigma54_DBD 3e-39 52.9 %
:HMM:PFM   275->434 PF04552 * Sigma54_DBD 4.6e-67 53.5 159/160  
:HMM:PFM   78->261 PF04963 * Sigma54_CBD 5.9e-51 32.2 183/195  
:HMM:PFM   3->51 PF00309 * Sigma54_AID 4.1e-16 51.0 49/49  
:BLT:SWISS 1->436 RP54_BACSU 0.0 100.0 %
:PROS 322->341|PS00717|SIGMA54_1
:PROS 414->421|PS00718|SIGMA54_2
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB15425.1 GT:GENE sigL GT:PRODUCT RNA polymerase sigma-54 factor (sigma-L) GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION complement(3512498..3513808) GB:FROM 3512498 GB:TO 3513808 GB:DIRECTION - GB:GENE sigL GB:PRODUCT RNA polymerase sigma-54 factor (sigma-L) GB:FUNCTION 16.3: Control GB:NOTE Evidence 1a: Function experimentally demonstrated in the studied strain; PubMedId: 11274109, 12533460, 12634342, 16166551, 16585774; Product type r: regulator GB:PROTEIN_ID CAB15425.1 GB:DB_XREF GOA:P24219 InterPro:IPR007634 SubtiList:BG10748 UniProtKB/Swiss-Prot:P24219 GB:GENE:GENE sigL LENGTH 436 SQ:AASEQ MDMKLQQVQVLKPQLTQELRQAITLLGYHSAELAEYIDELSLENPLIERKETDTPPLSYHKTNKNRMNAQEAGLQLSNPQKTLQDALKQQSLDMNLTNTEKKIFNYLIHSLDSNGYLEEDIEEAARRLSVSAKEAEAVLAKLQSLEPAGIGARSLQECILLQLQRLPNRNEQAEMLVSAHFDAFAQKKWKTLSVETGIPLHTIQDISDDIAALHPRPGLLFARPEQDVYIEPDIFITVKNGHIAAELNTRSFPEIDLHPQYRTLLSSGSCQDTVSYLSAKYQEWRWLSRALRQRKQTITRIINELITRQKDFFLKGRSAMKPLTLREVADCLSLHESTVSRAIKGKTIQTPYGLFEMKLFFSAKAEASGDGDASNYAVKTHLENLINQEDKTKPLSDQKLVDLLYEQHGIQISRRTVAKYRDQMNIPSSAARKRYK GT:EXON 1|1-436:0| SW:ID RP54_BACSU SW:DE RecName: Full=RNA polymerase sigma-54 factor; SW:GN Name=sigL; OrderedLocusNames=BSU34200; SW:KW Complete proteome; DNA-binding; DNA-directed RNA polymerase;Nucleotidyltransferase; Sigma factor; Transcription;Transcription regulation; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->436|RP54_BACSU|0.0|100.0|436/436| GO:SWS:NREP 8 GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0003899|"GO:DNA-directed RNA polymerase activity"|DNA-directed RNA polymerase| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0016987|"GO:sigma factor activity"|Sigma factor| GO:SWS GO:0006355|"GO:regulation of transcription, DNA-dependent"|Sigma factor| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| PROS 322->341|PS00717|SIGMA54_1|PDOC00593| PROS 414->421|PS00718|SIGMA54_2|PDOC00593| COIL:NAA 30 COIL:NSEG 1 COIL:REGION 117->146| SEG 4->17|klqqvqvlkpqltq| BL:PDB:NREP 1 BL:PDB:REP 382->433|2o8kA|5e-10|47.1|51/63| RP:PDB:NREP 1 RP:PDB:REP 355->424|2ahqA|5e-13|30.8|65/67| RP:PFM:NREP 2 RP:PFM:REP 76->262|PF04963|1e-30|37.6|186/195|Sigma54_CBD| RP:PFM:REP 276->433|PF04552|3e-39|52.9|157/159|Sigma54_DBD| HM:PFM:NREP 3 HM:PFM:REP 275->434|PF04552|4.6e-67|53.5|159/160|Sigma54_DBD| HM:PFM:REP 78->261|PF04963|5.9e-51|32.2|183/195|Sigma54_CBD| HM:PFM:REP 3->51|PF00309|4.1e-16|51.0|49/49|Sigma54_AID| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF04963|IPR007046| GO:PFM GO:0006352|"GO:transcription initiation"|PF04963|IPR007046| RP:SCP:NREP 1 RP:SCP:REP 389->436|1m0tA1|1e-13|22.9|48/110|c.30.1.4| OP:NHOMO 603 OP:NHOMOORG 543 OP:PATTERN -------------------------------------------------------------------- 111-----------------------------------------------------------------------------1--111-1111111111--1111111111111111111111111111111111111--------1----------------------------------------------11111111111111111111111111111111111111111---------------------1----1-----11------1---------------------------------------------------11111111111111-1111111-1---1--1-1111111111-11----1111111-----112111111111111111111111-11111211221-111122111211111111-14344--1--------12211111------------------------------11111122122221222111122222222112221111--22211211211111111211111--111-111122111111111111111111111111111111111-111-111111111111111121--11111111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111---1-----111111111---------------11111111111111111111111111111---------11111111111111122222222231111--1111111111111-1-11--------------------------11--------111 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 79 STR:RPRED 18.1 SQ:SECSTR ##################################################################################################################################################################################################################################################################################################################################################################ccccccccccccccccccccHHHHHHHHHHHGGGccccccccHHHHHHHHHTTTcccccHHHHHHHHHHTTccccHHHH### DISOP:02AL 1-3, 5-7, 53-79, 263-278, 368-370, 427-436| PSIPRED ccccHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccEEccHHHHHHHccccHHHHHHHHHHHHcccccccEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccEEccEEEEEEEccEEEEEEccccccEEEEcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccEEEEccccEEEcccccEEHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEHHHHHHHHHcccccHHHHcccc //