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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : ybbD
DDBJ      :ybbD         putative beta-hexosaminidase, putative lipoprotein
Swiss-Prot:YBBD_BACSU   RecName: Full=Uncharacterized lipoprotein ybbD;AltName: Full=ORF1;Flags: Precursor;

Homologs  Archaea  12/68 : Bacteria  638/915 : Eukaryota  88/199 : Viruses  0/175   --->[See Alignment]
c.1.8c.23.11e.8.1
:642 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   26->642 3bmxA PDBj 0.0 100.0 %
:RPS:PDB   26->642 3bmxA PDBj e-138 95.9 %
:RPS:SCOP  22->423 1ex1A1  c.1.8.7 * 1e-74 25.1 %
:RPS:SCOP  439->542 1d0eA  e.8.1.2 * 6e-04 15.5 %
:RPS:SCOP  551->634 1ex1A2  c.23.11.1 * 3e-04 30.8 %
:HMM:SCOP  17->434 1ex1A1 c.1.8.7 * 1.4e-104 39.5 %
:RPS:PFM   112->348 PF00933 * Glyco_hydro_3 4e-35 41.8 %
:HMM:PFM   115->348 PF00933 * Glyco_hydro_3 1.9e-72 36.1 216/227  
:HMM:PFM   436->637 PF01915 * Glyco_hydro_3_C 1.3e-22 24.9 185/211  
:BLT:SWISS 1->642 YBBD_BACSU 0.0 100.0 %
:PROS 304->321|PS00775|GLYCOSYL_HYDROL_F3
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB11942.1 GT:GENE ybbD GT:PRODUCT putative beta-hexosaminidase, putative lipoprotein GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION complement(186452..188380) GB:FROM 186452 GB:TO 188380 GB:DIRECTION - GB:GENE ybbD GB:PRODUCT putative beta-hexosaminidase, putative lipoprotein GB:FUNCTION 16.11: Scavenge (Catabolism) GB:NOTE Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId: 8063094; Product type pe : putative enzyme GB:PROTEIN_ID CAB11942.1 GB:DB_XREF GOA:P40406 InterPro:IPR001764 PDB:3BMX SubtiList:BG10832 UniProtKB/Swiss-Prot:P40406 GB:GENE:GENE ybbD LENGTH 642 SQ:AASEQ MRPVFPLILSAVLFLSCFFGARQTEASASKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASLVKKYQFGGIILFAENVKTTKQTVQLTDDYQKASPKIPLMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKKIKPVSLSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGVIDDTISDSSKWATVFPRAVMKAALQHNKPFVLMSLRNPYDAANFEEAKALIAVYGFKGYANGRYLQPNIPAGVMAIFGQAKPKGTLPVDIPSVTKPGNTLYPLGYGLNIKTGRPL GT:EXON 1|1-642:0| SW:ID YBBD_BACSU SW:DE RecName: Full=Uncharacterized lipoprotein ybbD;AltName: Full=ORF1;Flags: Precursor; SW:GN Name=ybbD; Synonyms=yzbA; OrderedLocusNames=BSU01660; SW:KW 3D-structure; Cell membrane; Complete proteome; Glycosidase;Hydrolase; Lipoprotein; Membrane; Palmitate; Signal. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->642|YBBD_BACSU|0.0|100.0|642/642| GO:SWS:NREP 5 GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016798|"GO:hydrolase activity, acting on glycosyl bonds"|Glycosidase| GO:SWS GO:0008152|"GO:metabolic process"|Glycosidase| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0016020|"GO:membrane"|Membrane| PROS 304->321|PS00775|GLYCOSYL_HYDROL_F3|PDOC00621| TM:NTM 1 TM:REGION 1->22| SEG 175->188|pvvdinnnpdnpvi| SEG 424->434|lkaekklaeka| BL:PDB:NREP 1 BL:PDB:REP 26->642|3bmxA|0.0|100.0|617/617| RP:PDB:NREP 1 RP:PDB:REP 26->642|3bmxA|e-138|95.9|617/617| RP:PFM:NREP 1 RP:PFM:REP 112->348|PF00933|4e-35|41.8|220/226|Glyco_hydro_3| HM:PFM:NREP 2 HM:PFM:REP 115->348|PF00933|1.9e-72|36.1|216/227|Glyco_hydro_3| HM:PFM:REP 436->637|PF01915|1.3e-22|24.9|185/211|Glyco_hydro_3_C| GO:PFM:NREP 2 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF00933|IPR001764| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00933|IPR001764| RP:SCP:NREP 3 RP:SCP:REP 22->423|1ex1A1|1e-74|25.1|346/388|c.1.8.7| RP:SCP:REP 439->542|1d0eA|6e-04|15.5|97/259|e.8.1.2| RP:SCP:REP 551->634|1ex1A2|3e-04|30.8|65/214|c.23.11.1| HM:SCP:REP 17->434|1ex1A1|1.4e-104|39.5|362/0|c.1.8.7|1/1|(Trans)glycosidases| OP:NHOMO 1378 OP:NHOMOORG 738 OP:PATTERN --------1111111--1------1--1-4-------------------------------1------ 343-61112221-111111-1111111111111111111121-32221142-322--2--344253224212---122---22-----7764-4111--23713346225--------------1222222222222441------1111111-11111111111121111-111---1-11-121--4421-1---------------212211---1-21321122222151-----------------1-1-------1------11-1----1121111-11---------2-----------1-----122---222211122----------3----21-4111-2-2--11--1-2---1-221--21-6551-----2123211112111111111-1111-22122221121-11132213321111514112-1--111------------1111------------1111111111111-----121211111111121211222111122222111111121111231111111122112111121111111111112121111111-11111----2---11111113-11111----------------1---111--23-3513111222222211111122114--11111------23222222222222222-2222222222222222222232331112222222222222222222222221-222222212222--111111122221121211111111112122111111111111222222222222221222111122121111121111121111322323222222321-12111111222222222-2--------------------------221133222131 ----11---------6554676567772223334353433433323656877B563735232322----1--1-2-------1211---1-15-2-1111---231--2------------------------------------------------------3----------1---11---116215471--8574- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 617 STR:RPRED 96.1 SQ:SECSTR #########################cHHHHHHHHHHHHHHTccHHHHHHHTEEccccEEccTTccccEEcccccHHHHHHHHHHcccEEEccGGGcccHHHHHHHHHHHHHHccccccEEEEccccTTccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHTccEEccccccccccTTccccGGGcccccHHHHHHHHHHHHHHHHHTTcEEEEEEETccTTccccTTTccccccccHHHHHHTTHHHHHHHHHTTccEEEEcccccTTTcccEEEcTTTccEEEccGGGcHHHHccccccccccccEEEcccTTcHHHHTTccHHHHHHHHHHHTcccEEcccccccGGGTHHHHHHHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHTTcccccccccHHHHHHHHHHHTTcHHHHHHHHHHHHHHcEEEEEGGGcccccccTTcEEEEEEccHHHHHHHHHHHHHHHHTTcccccEEEEEEcTTccccHHHHHHHHHccEEEEEEccccccccEETTEEcccccccTTHHHHHHHHHHHHHHHTTccEEEEEcccGGGGGGcTTccEEEEccccccEETTEEcccHHHHHHHHHTTcccccccccccEEccccTTcEEEcTTccccTTTcccc DISOP:02AL 641-642| PSIPRED ccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccHHHHHHHEEEEccccccccccccccccccccHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEccHHHHHHHcccHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccHHHHHHHHHHHHccEEEEEEcccccccccccccEEEEEcccHHccccccccccccccccccccccccccccccccccccHHHHHcccHHEEEEHHHHHccHHHHcccccccccccccccccccHHHHHHHHHccccEEEEEEccccccccccccccEEEEEccccccccccccHHHHHHHHHHHccccccccccEEEccccccccEEEEccccccccccccc //