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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : ycbG
DDBJ      :ycbG         transcriptional regulator (GntR family)
Swiss-Prot:YCBG_BACSU   RecName: Full=Uncharacterized HTH-type transcriptional regulator ycbG;

Homologs  Archaea  11/68 : Bacteria  451/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:233 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   20->178 2di3B PDBj 2e-14 34.8 %
:RPS:PDB   8->232 3c7jA PDBj 8e-28 17.5 %
:RPS:SCOP  16->83 1e2xA1  a.4.5.6 * 2e-14 29.4 %
:RPS:SCOP  86->228 1e2xA2  a.78.1.1 * 2e-15 12.1 %
:HMM:SCOP  9->80 1v4rA1 a.4.5.6 * 6.3e-15 38.9 %
:HMM:SCOP  46->145 1ku9A_ a.4.5.36 * 5.2e-05 23.2 %
:RPS:PFM   20->80 PF00392 * GntR 3e-08 42.6 %
:RPS:PFM   104->220 PF07729 * FCD 3e-07 30.2 %
:HMM:PFM   18->80 PF00392 * GntR 2.5e-23 46.0 63/64  
:HMM:PFM   104->219 PF07729 * FCD 3.5e-22 25.0 116/125  
:BLT:SWISS 1->233 YCBG_BACSU e-131 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB12044.2 GT:GENE ycbG GT:PRODUCT transcriptional regulator (GntR family) GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION 273237..273938 GB:FROM 273237 GB:TO 273938 GB:DIRECTION + GB:GENE ycbG GB:PRODUCT transcriptional regulator (GntR family) GB:FUNCTION 16.3: Control GB:NOTE Evidence 1a: Function experimentally demonstrated in the studied strain; PubMedId: 12044674; Product type r: regulator GB:PROTEIN_ID CAB12044.2 GB:DB_XREF GOA:P42239 InterPro:IPR011991 SubtiList:BG11162 UniProtKB/Swiss-Prot:P42239 GB:GENE:GENE ycbG LENGTH 233 SQ:AASEQ MYEGLEDLKVDTVNRKTLAKQVIERIVHLLSSGQLRAGDKLPTEMELMDILHVSRPVLREALSSLETLGVITRKTRGGTYFNDKIGMQPFSVMLALATDNLPAIIEARMALELGLVTIAAEKINEEELQRLQKTIDDIANSTDNHYGEADKEFHRIIALSANNPVVEGMIQSLLITHAKIDSQIPYRERDVTVEYHKKIYDALAKRDPYKAHYHMYEHLKFVRDKILKGMDEK GT:EXON 1|1-233:0| SW:ID YCBG_BACSU SW:DE RecName: Full=Uncharacterized HTH-type transcriptional regulator ycbG; SW:GN Name=ycbG; OrderedLocusNames=BSU02500; SW:KW Complete proteome; DNA-binding; Transcription;Transcription regulation. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->233|YCBG_BACSU|e-131|100.0|233/233| GO:SWS:NREP 3 GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| BL:PDB:NREP 1 BL:PDB:REP 20->178|2di3B|2e-14|34.8|158/230| RP:PDB:NREP 1 RP:PDB:REP 8->232|3c7jA|8e-28|17.5|211/232| RP:PFM:NREP 2 RP:PFM:REP 20->80|PF00392|3e-08|42.6|61/64|GntR| RP:PFM:REP 104->220|PF07729|3e-07|30.2|116/125|FCD| HM:PFM:NREP 2 HM:PFM:REP 18->80|PF00392|2.5e-23|46.0|63/64|GntR| HM:PFM:REP 104->219|PF07729|3.5e-22|25.0|116/125|FCD| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 16->83|1e2xA1|2e-14|29.4|68/73|a.4.5.6| RP:SCP:REP 86->228|1e2xA2|2e-15|12.1|141/149|a.78.1.1| HM:SCP:REP 9->80|1v4rA1|6.3e-15|38.9|72/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 46->145|1ku9A_|5.2e-05|23.2|99/151|a.4.5.36|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 1369 OP:NHOMOORG 465 OP:PATTERN ------2-11-11111-1--------------------------1-----------------1----- 1---2121111-1-21-----1--1A-----11121-3951--1322-1---74B1-1--1-412247342----1------5-----11-------------1-111-2-----------------------------------1-------------------------------------3-----1-113111111111111121722212112122-4--111111122--------------1---1--------------------------1111111---------1-----------1-----------111126125222222212122222111211---112166113--113---2------122------3-21---111-1-33333333337---1--3--541-9BB399BCCABD133-14322144213--------1----1--------------------------------1-3--2433341121452221339522221252B234913322-1112438484--3----1-1111111---111-14-12111-3111-2-2-12311-------1---------------------------112232114331232224222332221321----1--------46633716557677766-5656978686577666667434432227374757776657546255477552-333333333333---1-----------254---1-1-1111-2214334323---4-33333769476972452----------1114222222223322----------------------------------------------------------------------1 --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 229 STR:RPRED 98.3 SQ:SECSTR ####HHHHccccccGGGHHHHHHHHHHHHHHTccccTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEEEcccHcGGGHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHGGGccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHc DISOP:02AL 232-234| PSIPRED cccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcc //