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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : yckB
DDBJ      :yckB         putative ABC transporter (binding lipoprotein)
Swiss-Prot:YCKB_BACSU   RecName: Full=Probable ABC transporter extracellular-binding protein yckB;AltName: Full=ORF2;Flags: Precursor;

Homologs  Archaea  16/68 : Bacteria  520/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:287 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   36->286 2ieeA PDBj e-117 100.0 %
:RPS:PDB   16->269 2a5sA PDBj 6e-30 9.7 %
:RPS:SCOP  45->269 1ii5A  c.94.1.1 * 2e-28 18.7 %
:HMM:SCOP  5->271 2a5sA1 c.94.1.1 * 8.6e-53 32.3 %
:RPS:PFM   57->269 PF00497 * SBP_bac_3 3e-21 32.5 %
:HMM:PFM   47->270 PF00497 * SBP_bac_3 6.6e-54 32.9 219/225  
:BLT:SWISS 1->287 YCKB_BACSU e-151 100.0 %
:PROS 72->85|PS01039|SBP_BACTERIAL_3
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB12132.1 GT:GENE yckB GT:PRODUCT putative ABC transporter (binding lipoprotein) GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION complement(367995..368858) GB:FROM 367995 GB:TO 368858 GB:DIRECTION - GB:GENE yckB GB:PRODUCT putative ABC transporter (binding lipoprotein) GB:FUNCTION 16.1: Circulate GB:NOTE Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter GB:PROTEIN_ID CAB12132.1 GB:DB_XREF GOA:P42400 InterPro:IPR018313 PDB:2IEE SubtiList:BG11178 UniProtKB/Swiss-Prot:P42400 GB:GENE:GENE yckB LENGTH 287 SQ:AASEQ MKSFMHSKAVIFSFTMAFFLILAACSGKNEADSKDTGWEQIKDKGKIVVATSGTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKKAAGAATTVYMEVARKYGAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADVSKKIDADVQDVDL GT:EXON 1|1-287:0| SW:ID YCKB_BACSU SW:DE RecName: Full=Probable ABC transporter extracellular-binding protein yckB;AltName: Full=ORF2;Flags: Precursor; SW:GN Name=yckB; OrderedLocusNames=BSU03380; SW:KW 3D-structure; Cell membrane; Complete proteome; Lipoprotein; Membrane;Palmitate; Signal; Transport. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->287|YCKB_BACSU|e-151|100.0|287/287| GO:SWS:NREP 3 GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0006810|"GO:transport"|Transport| PROS 72->85|PS01039|SBP_BACTERIAL_3|PDOC00798| TM:NTM 1 TM:REGION 4->25| SEG 149->165|ktlkdlkgkkaagaatt| BL:PDB:NREP 1 BL:PDB:REP 36->286|2ieeA|e-117|100.0|244/244| RP:PDB:NREP 1 RP:PDB:REP 16->269|2a5sA|6e-30|9.7|248/278| RP:PFM:NREP 1 RP:PFM:REP 57->269|PF00497|3e-21|32.5|206/222|SBP_bac_3| HM:PFM:NREP 1 HM:PFM:REP 47->270|PF00497|6.6e-54|32.9|219/225|SBP_bac_3| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00497|IPR001638| GO:PFM GO:0006810|"GO:transport"|PF00497|IPR001638| GO:PFM GO:0030288|"GO:outer membrane-bounded periplasmic space"|PF00497|IPR001638| RP:SCP:NREP 1 RP:SCP:REP 45->269|1ii5A|2e-28|18.7|214/222|c.94.1.1| HM:SCP:REP 5->271|2a5sA1|8.6e-53|32.3|251/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 1286 OP:NHOMOORG 537 OP:PATTERN 11--------------1-222211--------------52352---------1----1---------- ------1----1--1------2---2------1111-121----1--1111-3131-1----1-11--11-1---1---------------------------------1-------------------1--2-1----11-------1---111---------1---11-------------2341111--2523333353334433421225533411143344333338311122222222212222221213376462124444661434623236665333166555655555554443344444443155A97555613259453555523123332333-1-1-1-11111-4-21-111111116---111--1---1-111--------33323243349--------216-15223233534442-------1-11-2------------11--1---------------------------1-------252136665662333333543332327362321----1--232113112--2----411111111---------1-11222311-12-2--1------------431211111-1-1111111-1-----321-------1-111---11111111-11-1-2----------31353422222221222-2222222222222122112221543311212111111111121722221223-434444443444--1------2122--21-22221211111212-11111--242--22121422122221111----------12241111122111-----------------4------------------------------------------1---111111--1 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 271 STR:RPRED 94.4 SQ:SECSTR ###############EEEEcccTTTcEEEEccccHHTccccTTcEEEEEEEEcccccccEEEEEEEEEEEEcHHHHHHHHHHHHHTccEEEEEccccHHHHHHHTTcccEEcccccccHHHHTTEEEccccEEEcEEEEEETTcccccTTcHHHHcGGGccccccEEHTTcHHHHHHHGGGccccHHHHHHHHHTTcccEEEEEHHHHHHHHHTcTTccEEEEEcccGGGcEEEccEEETTcTTHHHHHHHHHHHHHHTHHHHHHHHHTcTGcEEEEEEEEHHHHH# DISOP:02AL 1-6| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccEEEEEEcccccccEEEEcccccccEEEEHHHHHHHHHHHcccEEEEEEccHHHHHHHHHcccccEEEEcccccHHHHHHHHHcccEEEEcEEEEEEcccccccccHHHHcccEEEEEcccHHHHHHHHHccccEEEEcccHHHHHHHHHcccEEEEEEcHHHHHHHHHHcccccEEEEEccccccccEEEEEccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccc //