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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : ydhD
DDBJ      :ydhD         spore cortex lytic enzyme
Swiss-Prot:YDHD_BACSU   RecName: Full=Putative sporulation-specific glycosylase ydhD;         EC=3.2.-.-;

Homologs  Archaea  1/68 : Bacteria  108/915 : Eukaryota  42/199 : Viruses  0/175   --->[See Alignment]
c.1.8d.7.1
:420 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   96->402 3cz8A PDBj e-167 99.7 %
:RPS:PDB   3->57 2djpA PDBj 3e-09 27.3 %
:RPS:PDB   49->93 1e01A PDBj 1e-07 28.9 %
:RPS:PDB   115->402 3cz8A PDBj 4e-45 94.1 %
:RPS:SCOP  4->46 1y7mA2  d.7.1.1 * 5e-09 27.9 %
:RPS:SCOP  50->95 1y7mA2  d.7.1.1 * 2e-08 39.1 %
:RPS:SCOP  93->400 1e15A2  c.1.8.5 * 6e-25 19.1 %
:HMM:SCOP  1->46 1y7mA2 d.7.1.1 * 4.1e-10 43.5 %
:HMM:SCOP  47->93 1y7mA2 d.7.1.1 * 1e-07 41.3 %
:HMM:SCOP  96->419 1e9lA1 c.1.8.5 * 1.6e-45 27.4 %
:RPS:PFM   4->45 PF01476 * LysM 1e-05 45.2 %
:RPS:PFM   50->92 PF01476 * LysM 3e-04 46.5 %
:RPS:PFM   170->400 PF00704 * Glyco_hydro_18 4e-20 34.9 %
:HMM:PFM   171->400 PF00704 * Glyco_hydro_18 1.2e-36 26.5 223/342  
:HMM:PFM   4->46 PF01476 * LysM 6.3e-12 39.5 43/44  
:HMM:PFM   50->93 PF01476 * LysM 2.8e-13 34.1 44/44  
:BLT:SWISS 1->420 YDHD_BACSU 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB12390.2 GT:GENE ydhD GT:PRODUCT spore cortex lytic enzyme GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION 616672..617934 GB:FROM 616672 GB:TO 617934 GB:DIRECTION + GB:GENE ydhD GB:PRODUCT spore cortex lytic enzyme GB:FUNCTION 16.5: Explore GB:NOTE Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; PubMedId: 11011148, 12177332; Product type cp: cell process GB:PROTEIN_ID CAB12390.2 GB:DB_XREF GOA:O05495 InterPro:IPR002482 PDB:3CZ8 SubtiList:BG12181 UniProtKB/Swiss-Prot:O05495 GB:GENE:GENE ydhD LENGTH 420 SQ:AASEQ MFIHIVGPGDSLFSIGRRYGASVDQIRGVNGLDETNIVPGQALLIPLYVYTVQPRDTLTAIAAKAFVPLERLRAANPGISPNALQAGAKITIPSISNYIAGTLSFYVLRNPDLDRELINDYAPYSSSISIFEYHIAPNGDIANQLNDAAAIETTWQRRVTPLATITNLTSGGFSTEIVHQVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFEQVSAADRDLFTGFLRQLRDRLQAGGYVLTIAVPAKTSDNIPWLRGYDYGGIGAVVNYMFIMAYDWHHAGSEPGPVAPITEIRRTIEFTIAQVPSRKIIIGVPLYGYDWIIPYQPGTVASAISNQNAIERAMRYQAPIQYSAEYQSPFFRYSDQQGRTHEVWFEDVRSMSRKMQIVREYRLQAIGAWQLTLGFTPGPWLLRKFFTIRKV GT:EXON 1|1-420:0| SW:ID YDHD_BACSU SW:DE RecName: Full=Putative sporulation-specific glycosylase ydhD; EC=3.2.-.-; SW:GN Name=ydhD; OrderedLocusNames=BSU05710; SW:KW 3D-structure; Carbohydrate metabolism; Complete proteome; Glycosidase;Hydrolase; Polysaccharide degradation; Repeat; Sporulation. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->420|YDHD_BACSU|0.0|100.0|420/420| GO:SWS:NREP 6 GO:SWS GO:0005975|"GO:carbohydrate metabolic process"|Carbohydrate metabolism| GO:SWS GO:0016798|"GO:hydrolase activity, acting on glycosyl bonds"|Glycosidase| GO:SWS GO:0008152|"GO:metabolic process"|Glycosidase| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0000272|"GO:polysaccharide catabolic process"|Polysaccharide degradation| GO:SWS GO:0030435|"GO:sporulation resulting in formation of a cellular spore"|Sporulation| SEG 290->301|iteirrtiefti| BL:PDB:NREP 1 BL:PDB:REP 96->402|3cz8A|e-167|99.7|301/302| RP:PDB:NREP 3 RP:PDB:REP 3->57|2djpA|3e-09|27.3|55/77| RP:PDB:REP 49->93|1e01A|1e-07|28.9|43/48| RP:PDB:REP 115->402|3cz8A|4e-45|94.1|288/302| RP:PFM:NREP 3 RP:PFM:REP 4->45|PF01476|1e-05|45.2|42/44|LysM| RP:PFM:REP 50->92|PF01476|3e-04|46.5|43/44|LysM| RP:PFM:REP 170->400|PF00704|4e-20|34.9|209/309|Glyco_hydro_18| HM:PFM:NREP 3 HM:PFM:REP 171->400|PF00704|1.2e-36|26.5|223/342|Glyco_hydro_18| HM:PFM:REP 4->46|PF01476|6.3e-12|39.5|43/44|LysM| HM:PFM:REP 50->93|PF01476|2.8e-13|34.1|44/44|LysM| GO:PFM:NREP 4 GO:PFM GO:0016998|"GO:cell wall macromolecule catabolic process"|PF01476|IPR018392| GO:PFM GO:0016998|"GO:cell wall macromolecule catabolic process"|PF01476|IPR018392| GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF00704|IPR001223| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00704|IPR001223| RP:SCP:NREP 3 RP:SCP:REP 4->46|1y7mA2|5e-09|27.9|43/48|d.7.1.1| RP:SCP:REP 50->95|1y7mA2|2e-08|39.1|45/48|d.7.1.1| RP:SCP:REP 93->400|1e15A2|6e-25|19.1|283/356|c.1.8.5| HM:SCP:REP 1->46|1y7mA2|4.1e-10|43.5|46/0|d.7.1.1|1/2|LysM domain| HM:SCP:REP 47->93|1y7mA2|1e-07|41.3|46/0|d.7.1.1|2/2|LysM domain| HM:SCP:REP 96->419|1e9lA1|1.6e-45|27.4|263/0|c.1.8.5|1/1|(Trans)glycosidases| OP:NHOMO 233 OP:NHOMOORG 151 OP:PATTERN ----------------------------------------------------------------1--- 211-1-----------------------------------1---------1-----------1---1---------------------------------------------------------------------11111---12--------------------------------------1-1----3-221212112121222212221322113331--------44-------------------------------------------------------------------------------------------333-1111111-1-2-111---312--5111133211142-3246----2--1---------------------------------------------------------------------------------------------------1-------------------11-1--------------------------------------------------------1-----------------------2-------------------1-----------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------111111111111----------------------------------------------------------- -----21------1-1------------------------------------1--------------------------------------------1------------11311-1-----111111-251-1111-1---1---1--11--111122-----------2--1--13-------------1--1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 416 STR:RPRED 99.0 SQ:SECSTR ##EEcccTTccHHHHHHHHTccHHHHHHHHTcccccGGGcccEEEEEEcccccccccHccGGGTTccccccccccHHHHHHHccccccTTTTccccccccEEEEEEEEEcGGGcEcGGGcccccccEEEEEEEEccTTcccccccccHHHHHHHHHTTcEEEEEEEcEETTEEcHHHHHHHHTcHHHHHHHHHHHHHHHHHHTccEEEEEcccccGGGHHHHHHHHHHHHHHHHHTTcEEEEEEEcccccccGGGTTccHHHHHHHccEEEEEccccccTTccccccccHHHHHHHHHHHTTTccGGGEEEEccccEEEEEccccTTcccEEEcHHHHHHHHHHTTcccEEETTTTEEEEEEEcTTccEEEEEcccHHHHHHHHHHHHHTTccEEEEEEEEEcccGGGGGGccccHHH## PSIPRED cEEEEEcccccHHHHHHHHcccHHHHHHHcccccccEEEccEEEEcccEEEccccccHHHHHHHHcccHHHHHHHcccccccEEEcccEEEEEcccccccccccccccccccccEEEEccccccccccccccccccccccEEEccccHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccHHHHHHHccEEEEEcccccccccccccccccccHHHHHHHHHccccHHHEEEEEEcccEEEEccccccccccccccHHHHHHHHHcccEEEEccccccEEEEEccccccEEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccccHHcccccEEcc //