[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : ydjJ
DDBJ      :ydjJ         putative membrane associated potassium channel
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  12/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
f.14.1
:341 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   95->150 1xl6A PDBj 7e-04 28.6 %
:RPS:PDB   88->124 2atkC PDBj 2e-05 26.7 %
:RPS:SCOP  63->155 1orqC  f.14.1.1 * 1e-05 20.2 %
:HMM:SCOP  35->156 1xl4A2 f.14.1.1 * 1.2e-12 26.1 %
:RPS:PFM   59->154 PF07885 * Ion_trans_2 4e-04 38.2 %
:HMM:PFM   71->155 PF07885 * Ion_trans_2 3.9e-14 27.6 76/79  
:BLT:SWISS 64->161 KCNS3_RAT 7e-04 30.8 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB12441.1 GT:GENE ydjJ GT:PRODUCT putative membrane associated potassium channel GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION complement(674832..675857) GB:FROM 674832 GB:TO 675857 GB:DIRECTION - GB:GENE ydjJ GB:PRODUCT putative membrane associated potassium channel GB:FUNCTION 16.1: Circulate GB:NOTE Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter GB:PROTEIN_ID CAB12441.1 GB:DB_XREF GOA:O34733 InterPro:IPR013099 SubtiList:BG12801 UniProtKB/TrEMBL:O34733 GB:GENE:GENE ydjJ LENGTH 341 SQ:AASEQ MNEGYIIAGLLLLTAGMIDFLWTTLWLESGAGPITRCLSAWLWKGCRKISGDHAKVLSMAGPLLLCLTLVIWISLFWSGWVLIYSSDPHSLMETQSKEPASWSDRIYFSGYVMFTLGNGDLAPNGGLWKLVTIIETAQGLLTITFSVTYLISVLSAVNQKRSFAQSVLSLGHDGTEIVHNAWNGKDFHDIDFLLVAASSELGKLTAQHNAFPILHFYHSTQHQESSIIAVAVLDEALTIFKYGIPEQYQPNQLHIKEARSSIKNYLDTVHTAYIHPAEQAPPEPDISKLQQSGIPALSKQTFQIAVNSIKERRQLLLGIIQAGARKWPVQEQAIGNAYSPK GT:EXON 1|1-341:0| BL:SWS:NREP 1 BL:SWS:REP 64->161|KCNS3_RAT|7e-04|30.8|91/100| TM:NTM 3 TM:REGION 4->26| TM:REGION 58->80| TM:REGION 139->160| BL:PDB:NREP 1 BL:PDB:REP 95->150|1xl6A|7e-04|28.6|56/291| RP:PDB:NREP 1 RP:PDB:REP 88->124|2atkC|2e-05|26.7|30/103| RP:PFM:NREP 1 RP:PFM:REP 59->154|PF07885|4e-04|38.2|76/81|Ion_trans_2| HM:PFM:NREP 1 HM:PFM:REP 71->155|PF07885|3.9e-14|27.6|76/79|Ion_trans_2| RP:SCP:NREP 1 RP:SCP:REP 63->155|1orqC|1e-05|20.2|84/223|f.14.1.1| HM:SCP:REP 35->156|1xl4A2|1.2e-12|26.1|115/0|f.14.1.1|1/1|Voltage-gated potassium channels| OP:NHOMO 15 OP:NHOMOORG 13 OP:PATTERN -------------------------------------------------------------------- --1------------------------------111-------------------------------------------------------------------2-------------------------------------------11-----------------------------------11----------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 59 STR:RPRED 17.3 SQ:SECSTR #######################################################################################TTc####TTcccccHHHHHHHHHHHHTTcccTTccccTTHHHHHHHHHHHHHHHHHHHHHHHH############################################################################################################################################################################################### DISOP:02AL 1-2, 164-173, 278-280, 282-284, 336-341| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccEEEccccccccHHHHHHHHEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccc //