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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : yhaM
DDBJ      :yhaM         3'-5' exonuclease
Swiss-Prot:YHAM_BACSU   RecName: Full=3'-5' exoribonuclease yhaM;         EC=3.1.-.-;

Homologs  Archaea  14/68 : Bacteria  212/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.211.1b.40.4
:314 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   14->92 3e0eA PDBj 9e-05 24.3 %
:RPS:PDB   110->289 2dqbE PDBj 6e-12 13.5 %
:RPS:SCOP  20->112 1wjjA  b.40.4.3 * 6e-07 12.5 %
:RPS:SCOP  146->310 2paqA1  a.211.1.1 * 5e-13 10.8 %
:HMM:SCOP  30->98 1quqA_ b.40.4.3 * 3.7e-05 26.1 %
:HMM:SCOP  131->314 1xx7A_ a.211.1.1 * 2.2e-07 21.7 %
:RPS:PFM   169->277 PF01966 * HD 4e-05 37.5 %
:HMM:PFM   161->278 PF01966 * HD 3.6e-15 27.3 110/118  
:HMM:PFM   28->89 PF01336 * tRNA_anti 9.9e-09 22.6 62/76  
:BLT:SWISS 1->314 YHAM_BACSU 0.0 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB12833.1 GT:GENE yhaM GT:PRODUCT 3'-5' exonuclease GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION 1069042..1069986 GB:FROM 1069042 GB:TO 1069986 GB:DIRECTION + GB:GENE yhaM GB:PRODUCT 3'-5' exonuclease GB:FUNCTION 16.6: Maintain GB:NOTE Evidence 1a: Function experimentally demonstrated in the studied strain; PubMedId: 12399495, 15805522, 15983136, 16267290; Product type e: enzyme GB:PROTEIN_ID CAB12833.1 GB:DB_XREF GOA:O07521 InterPro:IPR006675 SubtiList:BG12989 UniProtKB/Swiss-Prot:O07521 GB:GENE:GENE yhaM LENGTH 314 SQ:AASEQ MAKGIMLHEVGEQVDQYLLIKSSTKGIASNGKPFLTLMLQDQSGDIEAKLWDAKQSDEVTYAPQTIVKVVGDVHHYRGRTQLKLRNIRPVSEQENVNIDDFLETAPIPKNEMMDTITQYIFEMKNPNIQRITRFLVKKHEAEFMDYPAATKNHHEFVSGLAYHVVSMLNLAKAIADLYPSLDRDLLYAGVILHDLGKVKELSGPVSTSYTVEGNLLGHISIMVTELSKAAEELQIDSEEVLILQHLILSHHGKAEWGSPKPPMVKEAEILHYIDNLDAKMNMMDRALERVKPGEYTERVFALENRSFYKPTFHK GT:EXON 1|1-314:0| SW:ID YHAM_BACSU SW:DE RecName: Full=3'-5' exoribonuclease yhaM; EC=3.1.-.-; SW:GN Name=yhaM; OrderedLocusNames=BSU09930; SW:KW Cobalt; Complete proteome; Exonuclease; Hydrolase; Manganese;Nuclease. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->314|YHAM_BACSU|0.0|100.0|314/314| GO:SWS:NREP 3 GO:SWS GO:0004527|"GO:exonuclease activity"|Exonuclease| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease| RP:PDB:NREP 2 RP:PDB:REP 14->92|3e0eA|9e-05|24.3|74/89| RP:PDB:REP 110->289|2dqbE|6e-12|13.5|170/356| RP:PFM:NREP 1 RP:PFM:REP 169->277|PF01966|4e-05|37.5|96/117|HD| HM:PFM:NREP 2 HM:PFM:REP 161->278|PF01966|3.6e-15|27.3|110/118|HD| HM:PFM:REP 28->89|PF01336|9.9e-09|22.6|62/76|tRNA_anti| RP:SCP:NREP 2 RP:SCP:REP 20->112|1wjjA|6e-07|12.5|88/145|b.40.4.3| RP:SCP:REP 146->310|2paqA1|5e-13|10.8|139/177|a.211.1.1| HM:SCP:REP 30->98|1quqA_|3.7e-05|26.1|69/127|b.40.4.3|1/1|Nucleic acid-binding proteins| HM:SCP:REP 131->314|1xx7A_|2.2e-07|21.7|157/0|a.211.1.1|1/1|HD-domain/PDEase-like| OP:NHOMO 242 OP:NHOMOORG 226 OP:PATTERN -----1---------------------------1-11111111--11------1------------1- 111-------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------111111111111111122111111111111221111111111111111111111111111111-111111111--1111111111111111111111111111111111111111111111111111111-11212222222121--11111112----111---1-11-1------1----1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-11111111111111121111111111-11---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111---1--------1-------1211111-11111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 280 STR:RPRED 89.2 SQ:SECSTR #############EEEEEEEEcccEEEcccEE#EEEEEEEETTEEEEEEEEGGGGGccccTT##cEEEEEEEE##EEccEEEEEEEEEEEEc#####HHHccccccccHcccccccccccccHHHHHHHHHHTcccccccHHHHHGGGcccccccccccHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHTTTTccccccHHHHHHHHccccccHHHHHHHHHTTccccTTcccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccTTGGGGGGGHHH########### DISOP:02AL 1-2, 311-314| PSIPRED ccccHHHcccccccccEEEEEHHHHHHcccccEEEEEEEEccccEEEcccccccHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEccccccccHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccccccccc //