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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : yhbD
DDBJ      :yhbD         putative nucleic acid binding protein
Swiss-Prot:YHBD_BACSU   RecName: Full=Uncharacterized protein yhbD;

Homologs  Archaea  0/68 : Bacteria  31/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1a.6.1
:238 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   27->117 3d70A PDBj 2e-04 17.4 %
:RPS:SCOP  31->102 1pdnC  a.4.1.5 * 6e-04 21.4 %
:HMM:SCOP  29->101 1j9iA_ a.6.1.5 * 0.0002 25.0 %
:RPS:PFM   34->69 PF07022 * Phage_CI_repr 8e-05 44.4 %
:BLT:SWISS 1->238 YHBD_BACSU e-124 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB12722.1 GT:GENE yhbD GT:PRODUCT putative nucleic acid binding protein GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION 970667..971383 GB:FROM 970667 GB:TO 971383 GB:DIRECTION + GB:GENE yhbD GB:PRODUCT putative nucleic acid binding protein GB:NOTE Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf: putative factor GB:PROTEIN_ID CAB12722.1 GB:DB_XREF SubtiList:BG12237 UniProtKB/Swiss-Prot:P97032 GB:GENE:GENE yhbD LENGTH 238 SQ:AASEQ MLCFVFGLNNVTVLCYNVPIKGAGLMEEQLISKKELLERTSISYGQLYRWKRKNLIPEEWFIRKSTFTGQETFFPREEILKRISMIQKMKENLSLDEMREMLSPKMKDVSMTADELLHKGLVSRPALEAYSEDGGSPVFSSSDLLSLFVLEGLLQSGNVSLAEAKMAAEVLKKHDTEEIEKQTELIVLRKLGVTTCFIAAAADSILFESSVKVVERVDLLKASEELKTTFMQEGHQWM GT:EXON 1|1-238:0| SW:ID YHBD_BACSU SW:DE RecName: Full=Uncharacterized protein yhbD; SW:GN Name=yhbD; Synonyms=ygaS; OrderedLocusNames=BSU08940; SW:KW Complete proteome. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->238|YHBD_BACSU|e-124|100.0|238/100| SEG 138->150|vfsssdllslfvl| RP:PDB:NREP 1 RP:PDB:REP 27->117|3d70A|2e-04|17.4|86/276| RP:PFM:NREP 1 RP:PFM:REP 34->69|PF07022|8e-05|44.4|36/65|Phage_CI_repr| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF07022|IPR010744| GO:PFM GO:0016481|"GO:negative regulation of transcription"|PF07022|IPR010744| GO:PFM GO:0016564|"GO:transcription repressor activity"|PF07022|IPR010744| RP:SCP:NREP 1 RP:SCP:REP 31->102|1pdnC|6e-04|21.4|70/123|a.4.1.5| HM:SCP:REP 29->101|1j9iA_|0.0002|25.0|68/68|a.6.1.5|1/1|Putative DNA-binding domain| OP:NHOMO 31 OP:NHOMOORG 31 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-111111111-111111--11-1111-11----------111--------------1-----------------------------------------------------------------------------1--------1---1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 86 STR:RPRED 36.1 SQ:SECSTR ##########################ccccEEHHHHHHHHTccHHHHHHHHHTTccccc###EEcTTTccEEE##cGGGGGHHHHHHHHHHTccHHHHHHHTTccHHHHHHHHHHHH######################################################################################################################### DISOP:02AL 15-34| PSIPRED cEEEEEEcccEEEEEEEccccccccccHHHHcHHHHHHHHcccHHHHHHHHHHccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHccHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHcccccEEEEEHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHcccccc //