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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : yhdI
DDBJ      :yhdI         putative PLP-dependent transcriptional regulator
Swiss-Prot:YHDI_BACSU   RecName: Full=Uncharacterized HTH-type transcriptional regulator yhdI;

Homologs  Archaea  42/68 : Bacteria  583/915 : Eukaryota  126/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.67.1
:469 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   113->458 1x0mA PDBj 3e-32 26.7 %
:RPS:PDB   7->83 3by6D PDBj 4e-11 19.5 %
:RPS:PDB   108->467 2egyB PDBj 1e-39 23.2 %
:RPS:SCOP  8->80 1v4rA1  a.4.5.6 * 3e-09 21.9 %
:RPS:SCOP  104->461 1vp4A  c.67.1.1 * 8e-43 21.2 %
:HMM:SCOP  6->105 1v4rA1 a.4.5.6 * 3.5e-15 33.0 %
:HMM:SCOP  72->469 1wstA1 c.67.1.1 * 4.5e-81 28.0 %
:RPS:PFM   132->427 PF00155 * Aminotran_1_2 4e-26 30.9 %
:HMM:PFM   121->431 PF00155 * Aminotran_1_2 9.3e-20 19.5 302/363  
:HMM:PFM   15->77 PF00392 * GntR 1.8e-14 36.5 63/64  
:BLT:SWISS 1->469 YHDI_BACSU 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB12787.1 GT:GENE yhdI GT:PRODUCT putative PLP-dependent transcriptional regulator GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION complement(1026255..1027664) GB:FROM 1026255 GB:TO 1027664 GB:DIRECTION - GB:GENE yhdI GB:PRODUCT putative PLP-dependent transcriptional regulator GB:FUNCTION 16.3: Control GB:NOTE Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId: 15223311; Product type pr : putative regulator GB:PROTEIN_ID CAB12787.1 GB:DB_XREF GOA:O07578 InterPro:IPR011991 SubtiList:BG13015 UniProtKB/Swiss-Prot:O07578 GB:GENE:GENE yhdI LENGTH 469 SQ:AASEQ MDITPFLDKKSKTPLYEQLYTFFKQEISHARITKGTRLPSKRRLSSLLDVSTATIERAYEQLTAEGYVKSKPKIGWFAAEVEPGFPTAPDHFQQSVQPGLHQKNAPAIDFHQGSVDPTLFPFNAWRKSIVKSLDRYSGSFHTSGDPQGEYELRHMIARFVRLSRGVNCEPGQIIIGAGTTVLLQNLCLSLKPGTKIGFEEPGFHRSRRMFEANHMDVTPICSDAEGVLPDELYRQNPYLMYTTPSHQFPIGTIMTITRRQELLAWAAETNSFIIEDDYDGEFRYSGHPIPSLQGLDPNGRVIYLGTFSKSLLPSLRLSFMIVPPELMEPIQNNVQLMKQTVSAHSQLALADFIETGEWQKHINRMRSLYRKKHAVLLEAIRSELGNTVEILGKNSGLHILLRLLFPASEEEAIQAAADHGVTLYPVSPSYIEQTPFTSVLIGYGGLSEEDIRLGIQKLKTAWAPLISSY GT:EXON 1|1-469:0| SW:ID YHDI_BACSU SW:DE RecName: Full=Uncharacterized HTH-type transcriptional regulator yhdI; SW:GN Name=yhdI; OrderedLocusNames=BSU09480; SW:KW Aminotransferase; Complete proteome; DNA-binding; Pyridoxal phosphate;Transcription; Transcription regulation; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->469|YHDI_BACSU|0.0|100.0|469/469| GO:SWS:NREP 5 GO:SWS GO:0008483|"GO:transaminase activity"|Aminotransferase| GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| SEG 37->48|rlpskrrlssll| BL:PDB:NREP 1 BL:PDB:REP 113->458|1x0mA|3e-32|26.7|345/403| RP:PDB:NREP 2 RP:PDB:REP 7->83|3by6D|4e-11|19.5|77/121| RP:PDB:REP 108->467|2egyB|1e-39|23.2|353/394| RP:PFM:NREP 1 RP:PFM:REP 132->427|PF00155|4e-26|30.9|291/341|Aminotran_1_2| HM:PFM:NREP 2 HM:PFM:REP 121->431|PF00155|9.3e-20|19.5|302/363|Aminotran_1_2| HM:PFM:REP 15->77|PF00392|1.8e-14|36.5|63/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0009058|"GO:biosynthetic process"|PF00155|IPR004839| GO:PFM GO:0016769|"GO:transferase activity, transferring nitrogenous groups"|PF00155|IPR004839| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00155|IPR004839| RP:SCP:NREP 2 RP:SCP:REP 8->80|1v4rA1|3e-09|21.9|73/100|a.4.5.6| RP:SCP:REP 104->461|1vp4A|8e-43|21.2|358/420|c.67.1.1| HM:SCP:REP 6->105|1v4rA1|3.5e-15|33.0|100/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 72->469|1wstA1|4.5e-81|28.0|393/0|c.67.1.1|1/1|PLP-dependent transferases| OP:NHOMO 2236 OP:NHOMOORG 751 OP:PATTERN 1121113222122222-222121---------------1111111-12------11111221111--- 123-911-111-1-3------1---5------111134541312231-2111233311--233242465511---11113-421---------2-------3---914-1----------------1-11--11--21133---33-------1111-------1--112-------------33411111--57787898A49989A94554478A921-A111111111J6122121222222222211142-211111---3322111--111---11111111221111-1111111111111111111111111111114325777777726215441212521-1131--33-2--1---111112----2111------1644-1-3112122222222125-12222414371-5221322357333-1--3162-1423622222222-22--122--------------------------------1-29976AJGHHHLCBBB9JJKKCCCC59KDFCADB--89533333E885A6471133433---------1231-1--1131122544-312--111-222246--2-----------------------1--322-213--12-4223---2122--1-2-3---1-1-------35841652332222212-32123122123331121147777612121333232222222329-13---1--633333133333-------------1-727112---1-------17767643-11228898A898799A73346----------211411111455542322122111------1111----------------------------------------1121111111-3- ----22------11111211111212-------1111111-11111--12122211--11---11--112--212-----11112-1--42-12211-1-1--212-1-131211121---11-21-21342-11111-111111-11-11----111124323211---A--2-1-1-5---112--52---241222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 469 STR:RPRED 100.0 SQ:SECSTR HHHHHcccccccccccccEEccccccccEEEEEEETTcHHHHHHHHTTcccHHHHHHHHHHHHHHHHcccTTTccEccTTHHHHccccccHHHHccccTHHHTccccEEcccccccGGGccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccTccGGGEEEEccHHHHHHHHHHHccTTcEEEEEEcccHHHHHHHHTTccEEEEEEEETTEEcHHHHHHHHHHcEEEcccccTTTcccccHHHHHHHHHHHHTTTccEEEEcTTTTcccccccHHHHHHTTTcccEEEEEEcTTTTccTTccEEEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHccTTcEEcccccccEEEEEccTTccHHHHHHHHHHTTEEcEEcGGGcTTcccTTEEEEEcccccHHHHHHHHHHHHHHHHHHcccc PSIPRED ccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEccccEEEccccccccccccccHHHHHHHHHHcccccEEcccccccHHHccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccHHHEEEcccHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHcccEEEEEccccccccHHHHHccccEEEEEcccccccccccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccHHHccccccEEEEcccHHHHHHHHHHEEEEccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEEEEccccccHHHHHHHHHHcccEEEEccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHcc //