[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : yhdK
DDBJ      :yhdK         negative regulator of the activity of sigma-M
Swiss-Prot:YHDK_BACSU   RecName: Full=Probable anti-sigma-M factor yhdK;

Homologs  Archaea  0/68 : Bacteria  5/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:96 amino acids
:PSIPRED
:BLT:SWISS 1->96 YHDK_BACSU 3e-41 100.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB12789.1 GT:GENE yhdK GT:PRODUCT negative regulator of the activity of sigma-M GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION complement(1028233..1028523) GB:FROM 1028233 GB:TO 1028523 GB:DIRECTION - GB:GENE yhdK GB:PRODUCT negative regulator of the activity of sigma-M GB:NOTE Evidence 1a: Function experimentally demonstrated in the studied strain; PubMedId: 10216858; Product type ph: phenotype GB:PROTEIN_ID CAB12789.1 GB:DB_XREF GOA:O07580 SubtiList:BG13017 UniProtKB/Swiss-Prot:O07580 GB:GENE:GENE yhdK LENGTH 96 SQ:AASEQ MELVRIFKEHNVFGWISVGTAVLSLLLLNLAIISNVTFYSYQMLPFAMAAVPFGVVELFIKRGRTGPGLLGVILNLFVIICVYTIVSVDTNLQFGF GT:EXON 1|1-96:0| SW:ID YHDK_BACSU SW:DE RecName: Full=Probable anti-sigma-M factor yhdK; SW:GN Name=yhdK; OrderedLocusNames=BSU09500; SW:KW Cell membrane; Complete proteome; Membrane; Repressor; Transcription;Transcription regulation; Transmembrane. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->96|YHDK_BACSU|3e-41|100.0|96/100| GO:SWS:NREP 5 GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| GO:SWS GO:0016021|"GO:integral to membrane"|Transmembrane| TM:NTM 3 TM:REGION 14->36| TM:REGION 39->60| TM:REGION 66->88| SEG 21->36|avlsllllnlaiisnv| OP:NHOMO 5 OP:NHOMOORG 5 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------1111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PSIPRED ccHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHEEEEEEEEEEEccEEEcc //