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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : yhdY
DDBJ      :yhdY         putative integral membrane protein; putative small conductance mechano-sensitive channel
Swiss-Prot:YHDY_BACSU   RecName: Full=Uncharacterized mscS family protein yhdY;

Homologs  Archaea  42/68 : Bacteria  465/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
b.38.1d.58.43f.24.1f.34.1
:371 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   129->352 2vv5A PDBj 8e-14 30.6 %
:RPS:SCOP  7->84 1ehkA  f.24.1.1 * 4e-04 25.0 %
:RPS:SCOP  182->247 2oauA1  b.38.1.3 * 1e-18 30.3 %
:RPS:SCOP  248->352 2oauA2  d.58.43.1 * 3e-13 21.2 %
:HMM:SCOP  93->180 2oauA3 f.34.1.1 * 1.4e-11 24.4 %
:HMM:SCOP  181->247 2oauA1 b.38.1.3 * 1.2e-19 44.8 %
:HMM:SCOP  248->353 2oauA2 d.58.43.1 * 1.1e-13 27.0 %
:RPS:PFM   21->154 PF07786 * DUF1624 2e-04 31.2 %
:RPS:PFM   140->340 PF00924 * MS_channel 8e-29 34.8 %
:HMM:PFM   139->342 PF00924 * MS_channel 1.3e-67 38.7 204/207  
:BLT:SWISS 1->371 YHDY_BACSU 0.0 100.0 %
:PROS 211->245|PS01246|UPF0003
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB12803.1 GT:GENE yhdY GT:PRODUCT putative integral membrane protein; putative small conductance mechano-sensitive channel GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION 1038909..1040024 GB:FROM 1038909 GB:TO 1040024 GB:DIRECTION + GB:GENE yhdY GB:PRODUCT putative integral membrane protein; putative small conductance mechano-sensitive channel GB:FUNCTION 16.12: Sense GB:NOTE Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId: 12077558, 15849754, 16850406; Product type pm: putative membrane component GB:PROTEIN_ID CAB12803.1 GB:DB_XREF GOA:O07594 InterPro:IPR006686 SubtiList:BG13031 UniProtKB/Swiss-Prot:O07594 GB:GENE:GENE yhdY LENGTH 371 SQ:AASEQ MPDYLQQYFTLDNIIQIGISLAILLVFLILRKLFTRYFFNLLFNLTNRPKTEIFKQVVLAFDKPARWFFVALGLFLAIRYSPFLDEQMPVISKIYRSLIVALLCWGLCNLTATSSFIFHKVNQRFELDMDDILAPFLSKLLRFVIIALSVSVIAQEFNYDVNGFVAGLGLGGLAFALAAKDTISNFFGGIIIITEKPFTIGDWVETSTVTGSVEDITFRSTRFRTAQGALVTVPNSTLSMEAITNWTRMTKRQITFSIHVSYATPIENLERSIHSLRTMLLEHEGVDNEIIMVNFDTFADSYYNLFFNFYTKTTVWAENLNIREDINYKIIEILGAEGVQFAYPGQMVVVKQKHESDQFQVNLNKEEKERA GT:EXON 1|1-371:0| SW:ID YHDY_BACSU SW:DE RecName: Full=Uncharacterized mscS family protein yhdY; SW:GN Name=yhdY; OrderedLocusNames=BSU09640; SW:KW Cell membrane; Complete proteome; Membrane; Transmembrane. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->371|YHDY_BACSU|0.0|100.0|371/371| GO:SWS:NREP 3 GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0016021|"GO:integral to membrane"|Transmembrane| PROS 211->245|PS01246|UPF0003|PDOC00959| TM:NTM 5 TM:REGION 9->30| TM:REGION 63->85| TM:REGION 95->117| TM:REGION 130->152| TM:REGION 159->181| SEG 163->179|gfvaglglgglafalaa| BL:PDB:NREP 1 BL:PDB:REP 129->352|2vv5A|8e-14|30.6|219/256| RP:PFM:NREP 2 RP:PFM:REP 21->154|PF07786|2e-04|31.2|125/211|DUF1624| RP:PFM:REP 140->340|PF00924|8e-29|34.8|198/203|MS_channel| HM:PFM:NREP 1 HM:PFM:REP 139->342|PF00924|1.3e-67|38.7|204/207|MS_channel| GO:PFM:NREP 2 GO:PFM GO:0016020|"GO:membrane"|PF00924|IPR006685| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00924|IPR006685| RP:SCP:NREP 3 RP:SCP:REP 7->84|1ehkA|4e-04|25.0|76/544|f.24.1.1| RP:SCP:REP 182->247|2oauA1|1e-18|30.3|66/67|b.38.1.3| RP:SCP:REP 248->352|2oauA2|3e-13|21.2|99/101|d.58.43.1| HM:SCP:REP 93->180|2oauA3|1.4e-11|24.4|86/0|f.34.1.1|2/2|Mechanosensitive channel protein MscS (YggB), transmembrane region| HM:SCP:REP 181->247|2oauA1|1.2e-19|44.8|67/0|b.38.1.3|1/1|Sm-like ribonucleoproteins| HM:SCP:REP 248->353|2oauA2|1.1e-13|27.0|100/0|d.58.43.1|1/1|Mechanosensitive channel protein MscS (YggB), C-terminal domain| OP:NHOMO 855 OP:NHOMOORG 513 OP:PATTERN 11-1321----------------1422213621-12213333312121-3132-1211222----1-- -11-----------------------------------------------------------------1------111----1111111122-2112---26-5333-21--------------131---111-23--------1-525321-1-111211213-132412121111-21111--1-------1---------------111111------1------------11-1--1--111-----------------------------------------------------------------------------------------1-1-2--111111-1-111--11--111-1-111---1113---1-------------1111111-1111--12---------222-222122132211114222211111311111111111---------------1--------------------12-11-111-2-1111------11-1------2--2221--111-1211---11112111---1----------1--13422-12113111-1111231511111-3-21111111111111111111112313--22-531223433222223333314233123---11-2111111221-1212222222222-222222222222222222211111-134334434444434344222222211-211111111111---111111-----1213111---1----111-11111112232-222222322323323332--------243331111144443111111111111111--1--11--1111111111------------------------------1------11 ------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------11--------12-----------1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 219 STR:RPRED 59.0 SQ:SECSTR ################################################################################################################################ccHHHHHHHHHHHHHHHHHHHHHHHHHTTTcccTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTccccTTcEEEccccEEEEEEEcccEEEEEcTTccEEEEEHHHHHTcccEEcccccEEEEEEEEEEcTTccHHHHHHHHHHH##HHHcTTccTTccEEEEEEEEccccEEEEEEEEEET###TTHHHHHHHHHHHHHHHHHHHTcccccccccccccc################### DISOP:02AL 351-371| PSIPRED cccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccEEEEEEEEEEEEEEEEEccccEEEEccHHHHcccEEEEEccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccccc //