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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : ymfC
DDBJ      :ymfC         putative transcriptional regulator (GntR family)
Swiss-Prot:YMFC_BACSU   RecName: Full=Uncharacterized HTH-type transcriptional regulator ymfC;

Homologs  Archaea  0/68 : Bacteria  468/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.190.1
:241 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->91 1v4rA PDBj 8e-08 28.6 %
:BLT:PDB   109->236 3ddvD PDBj 2e-09 25.0 %
:RPS:PDB   7->240 3eetA PDBj 6e-31 16.7 %
:RPS:SCOP  1->91 1v4rA1  a.4.5.6 * 3e-18 28.6 %
:RPS:SCOP  85->239 2ooiA1  d.190.1.2 * 5e-30 18.1 %
:HMM:SCOP  1->100 1v4rA1 a.4.5.6 * 2.4e-20 36.0 %
:HMM:SCOP  83->236 2fa1A1 d.190.1.2 * 3.1e-37 28.1 %
:RPS:PFM   13->73 PF00392 * GntR 3e-11 50.8 %
:RPS:PFM   100->232 PF07702 * UTRA 6e-13 27.8 %
:HMM:PFM   96->233 PF07702 * UTRA 4.3e-35 26.8 138/141  
:HMM:PFM   10->73 PF00392 * GntR 1.1e-23 54.7 64/64  
:BLT:SWISS 1->241 YMFC_BACSU e-138 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB13554.1 GT:GENE ymfC GT:PRODUCT putative transcriptional regulator (GntR family) GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION 1754785..1755510 GB:FROM 1754785 GB:TO 1755510 GB:DIRECTION + GB:GENE ymfC GB:PRODUCT putative transcriptional regulator (GntR family) GB:FUNCTION 16.3: Control GB:NOTE Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator GB:PROTEIN_ID CAB13554.1 GB:DB_XREF GOA:O31761 InterPro:IPR011991 SubtiList:BG13423 UniProtKB/Swiss-Prot:O31761 GB:GENE:GENE ymfC LENGTH 241 SQ:AASEQ MSTKADNRHLYLKVIERIKEDIKNGIYTEKEKLPSEFELSKKLGVSRATLREALRILEEEHVIIRRHGVGTFVHSKPLFLSGIEQLNSVTKMIEQANMTPGTIFLSSQVLMPSEDDTKRFHLAEGQELFYLERVRTADGQPIVYCIDKIPMNILPNSFSHQQESMFDLLEKNSGSVISYAVTDIEPIGYHDTISPVLECDPETALLLLKQTHYDQHDKPVLYSLNYFRADKFRFHVLRKRF GT:EXON 1|1-241:0| SW:ID YMFC_BACSU SW:DE RecName: Full=Uncharacterized HTH-type transcriptional regulator ymfC; SW:GN Name=ymfC; OrderedLocusNames=BSU16810; SW:KW Complete proteome; DNA-binding; Transcription;Transcription regulation. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->241|YMFC_BACSU|e-138|100.0|241/241| GO:SWS:NREP 3 GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| BL:PDB:NREP 2 BL:PDB:REP 1->91|1v4rA|8e-08|28.6|91/100| BL:PDB:REP 109->236|3ddvD|2e-09|25.0|128/138| RP:PDB:NREP 1 RP:PDB:REP 7->240|3eetA|6e-31|16.7|227/238| RP:PFM:NREP 2 RP:PFM:REP 13->73|PF00392|3e-11|50.8|61/64|GntR| RP:PFM:REP 100->232|PF07702|6e-13|27.8|133/141|UTRA| HM:PFM:NREP 2 HM:PFM:REP 96->233|PF07702|4.3e-35|26.8|138/141|UTRA| HM:PFM:REP 10->73|PF00392|1.1e-23|54.7|64/64|GntR| GO:PFM:NREP 6 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| GO:PFM GO:0003677|"GO:DNA binding"|PF07702|IPR011663| GO:PFM GO:0030528|"GO:transcription regulator activity"|PF07702|IPR011663| GO:PFM GO:0045449|"GO:regulation of transcription"|PF07702|IPR011663| RP:SCP:NREP 2 RP:SCP:REP 1->91|1v4rA1|3e-18|28.6|91/100|a.4.5.6| RP:SCP:REP 85->239|2ooiA1|5e-30|18.1|155/157|d.190.1.2| HM:SCP:REP 1->100|1v4rA1|2.4e-20|36.0|100/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 83->236|2fa1A1|3.1e-37|28.1|153/0|d.190.1.2|1/1|Chorismate lyase-like| OP:NHOMO 1241 OP:NHOMOORG 469 OP:PATTERN -------------------------------------------------------------------- -1126------1---1111-14--231111125333125231-1-31--121324--2----122232521-------2---4-------1--------------1-111-----------------------------1-----1----11----------------1--------------231------1555554366255546586553655434444355557551121111111111111111121643238226464522645344332322223222222222222222224444444444444243111444314-27333333323416--344512-1-2----56-2--3--212111-2-1-233---------11--------33333332334------1--12--54421323346321111-2111-1121-----------1---1-------------------------------1---133123333331212233432222225255242--221-21-1---32-11-1-112-------------1------2------1------1-11----1------------------------------21--2-1-1-2--------------------------------53231324443431356-444542154543333433444412---4234343444344444244234441-222132222233---1-----------212----1----------333331-----15545412322214-133---------1----1111112311--11111111-------1-------------------------------------------23---5-1-1-- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------5---------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 240 STR:RPRED 99.6 SQ:SECSTR HccccccccHHHHHHHHHHHHHHHTcccTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEcccEEEEEccccccEEEEccccccccccHccTTccEEEEEEEEEEEccHHHHHHHTccTTcEEEEEEEEEEEEETTEEEEEEEEEHHHHTTcTTcTTccTTTHHHHHTTccccEEEEEEEEEEccHHHHHHHTccTTcEEEEEEEEEEEETTEEEEEEEEEEETTTEEEEccccc# DISOP:02AL 1-10| PSIPRED cccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEcccEEEEccccHHHHHHHHHccHHHHHHHccccHHEEEEEEccccccHHHHHHHcccccHHHHHHHHHHHHcccEEEEEEEcccHHHccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEccHHHHHHHcccccccEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEc //