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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : yoaU
DDBJ      :yoaU         putative transcriptional regulator (LysR family)
Swiss-Prot:YOAU_BACSU   RecName: Full=Uncharacterized HTH-type transcriptional regulator yoaU;

Homologs  Archaea  1/68 : Bacteria  678/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:290 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->135 3fzvB PDBj 5e-12 31.1 %
:BLT:PDB   109->240 2fyiC PDBj 3e-07 32.5 %
:RPS:PDB   1->223 1b9nB PDBj 4e-26 10.7 %
:RPS:SCOP  1->104 1b9mA1  a.4.5.8 * 1e-17 17.5 %
:RPS:SCOP  92->287 1i69A  c.94.1.1 * 2e-24 20.2 %
:HMM:SCOP  1->115 1b9mA1 a.4.5.8 * 1.4e-21 33.3 %
:HMM:SCOP  90->290 1uthA_ c.94.1.1 * 3.7e-23 23.6 %
:RPS:PFM   5->65 PF00126 * HTH_1 1e-05 40.0 %
:RPS:PFM   94->286 PF03466 * LysR_substrate 1e-10 25.8 %
:HMM:PFM   92->288 PF03466 * LysR_substrate 2.7e-32 23.5 196/209  
:HMM:PFM   5->64 PF00126 * HTH_1 2.3e-21 45.8 59/60  
:BLT:SWISS 1->290 YOAU_BACSU e-164 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB13768.1 GT:GENE yoaU GT:PRODUCT putative transcriptional regulator (LysR family) GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION complement(2044956..2045828) GB:FROM 2044956 GB:TO 2045828 GB:DIRECTION - GB:GENE yoaU GB:PRODUCT putative transcriptional regulator (LysR family) GB:FUNCTION 16.3: Control GB:NOTE Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator GB:PROTEIN_ID CAB13768.1 GB:DB_XREF GOA:O34701 InterPro:IPR011991 SubtiList:BG13491 UniProtKB/Swiss-Prot:O34701 GB:GENE:GENE yoaU LENGTH 290 SQ:AASEQ MVMNMNHLHIFVKVGEKLNITEAAKELFISQPAVSKAIKNLESSLQLKLLIRDKHHGLMLTDIGKEILLLARQMKGIESKIYQVANRENKLLNGKVKIGSFPAVSTNIMPQAIAAFRSNYPLIRIELIEGTSDQIKGWVEDRTVDIGIAASPFEPFENQLLCNDYMVAVIPPQRDELKLEKHVDLETYQDDLIFCKGGHEIAMSNAFSQYNIELKENLTVQNAETLINMVKNNLGIGIISNFTLSSVPHQLIKKDIFPRVTRDIGVIAHSFEEITPAAHEFVKVLKAVVI GT:EXON 1|1-290:0| SW:ID YOAU_BACSU SW:DE RecName: Full=Uncharacterized HTH-type transcriptional regulator yoaU; SW:GN Name=yoaU; OrderedLocusNames=BSU18760; SW:KW Complete proteome; DNA-binding; Transcription;Transcription regulation. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->290|YOAU_BACSU|e-164|100.0|290/290| GO:SWS:NREP 3 GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| BL:PDB:NREP 2 BL:PDB:REP 5->135|3fzvB|5e-12|31.1|122/284| BL:PDB:REP 109->240|2fyiC|3e-07|32.5|123/228| RP:PDB:NREP 1 RP:PDB:REP 1->223|1b9nB|4e-26|10.7|214/245| RP:PFM:NREP 2 RP:PFM:REP 5->65|PF00126|1e-05|40.0|60/60|HTH_1| RP:PFM:REP 94->286|PF03466|1e-10|25.8|182/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 92->288|PF03466|2.7e-32|23.5|196/209|LysR_substrate| HM:PFM:REP 5->64|PF00126|2.3e-21|45.8|59/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->104|1b9mA1|1e-17|17.5|103/122|a.4.5.8| RP:SCP:REP 92->287|1i69A|2e-24|20.2|188/206|c.94.1.1| HM:SCP:REP 1->115|1b9mA1|1.4e-21|33.3|108/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 90->290|1uthA_|3.7e-23|23.6|199/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 4085 OP:NHOMOORG 686 OP:PATTERN -----------------------1-------------------------------------------- 254141112231--21---------4------1222-758-32311-1----333--4--23--1132422-111-1122164111111111-1-----114111512-3---------------1---1----1-45524---21221522312331-111113177551111111111111121-----23C88888998477899694B8BC97B2337342455544GL122343333333233634381322442-2228922441252254-3222-----11------------------------11111-1111-44CB4444444353255532237311131121CG452212411121--2-121112-----218683125834433333433327--1211A34571-B665346BF5A78A241548233445A767777771552-113-------------------------------25129UNGLUXXYYVBGGGGQQfXIGHGDIdIaQQWS-2FCB55595KAN2N964422239422222-2323265312-112111733--21243522123-213-12-1-----------------1-1-176954221A4745566662557556948669A1-12443------C8DB5B7DFFADA99FD-FDCDEA9ECCFAECCCDCAGLFBA577D9DADDFEDBFBEBADI8B9BBAB2-934444344444--131111134452367M333323233232432EDEEF7C244B2CDDEEJEMAOKNG39AC222121222369AE777777789943547542222121--1-22------------1-------------------------------------331 -------------1------------------------------------------------------------------------------------------------------------------------------------------------4------1---------1---------1--3-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 289 STR:RPRED 99.7 SQ:SECSTR EEEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccccccccHcEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHHTTTTTTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEGGGcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEGGGcTTccTTcEEEEEEcHHHHHHHHHTccEEEEEGGGccTTTcTEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTTc# DISOP:02AL 88-89| PSIPRED ccccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccEEEEEEcccccccEEEEEEcccEEEEEEcccccccccccccHHHcccccEEccccHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHcccHHHHHHHHHHHcccccEEEEccccccEEEEEEEEccccccHHHHHHHHHHHHHHc //