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Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : yokA
DDBJ      :yokA         putative DNA recombinase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  103/915 : Eukaryota  0/199 : Viruses  1/175   --->[See Alignment]
c.53.1
:545 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   15->138 3bvpA PDBj 1e-08 21.0 %
:RPS:SCOP  15->120 1gdtA2  c.53.1.1 * 1e-06 24.4 %
:HMM:SCOP  13->168 2gm4A2 c.53.1.1 * 1.2e-17 25.0 %
:RPS:PFM   189->293 PF07508 * Recombinase 5e-14 47.4 %
:HMM:PFM   189->298 PF07508 * Recombinase 2.5e-24 37.6 101/102  
:HMM:PFM   16->167 PF00239 * Resolvase 2.7e-17 25.2 139/141  
:HMM:PFM   378->511 PF10009 * DUF2252 0.00044 15.4 123/385  
:BLT:SWISS 174->356 CISA_BACSU 9e-15 34.1 %
:BLT:SWISS 387->515 RAD50_THEVO 8e-05 28.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB14084.1 GT:GENE yokA GT:PRODUCT putative DNA recombinase GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION 2284771..2286408 GB:FROM 2284771 GB:TO 2286408 GB:DIRECTION + GB:GENE yokA GB:PRODUCT putative DNA recombinase GB:NOTE Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId: 10376821, 401505; Product type pe: putative enzyme GB:PROTEIN_ID CAB14084.1 GB:DB_XREF GOA:O32006 InterPro:IPR006119 SubtiList:BG13568 UniProtKB/TrEMBL:O32006 GB:GENE:GENE yokA LENGTH 545 SQ:AASEQ MELKNIVNSYNITNILGYLRRSRQDMEREKRTGEDTLTEQKELMNKILTAIEIPYELKMEIGSGESIDGRPVFKECLKDLEEGKYQAIAVKEITRLSRGSYSDAGQIVNLLQSKRLIIITPYKVYDPRNPVDMRQIRFELFMAREEFEMTRERMTGAKYTYAAQGKWISGLAPYGYQLNKKTSKLDPVEDEAKVVQLIFNIFLNGLNGKDYSYTAIASHLTNLQIPTPSGKKRWNQYTIKAILQNEVYIGTVKYKVREKTKDGKRTIRPEKEQIVVQDAHAPIIDKEQFQQSQVKIANKVPLLPNKDEFELSELAGVCTCSKCGEPLSKYESKRIRKNKDGTESVYHVKSLTCKKNKCTYVRYNDVENAILDYLSSLNDLNDSTLTKHINSMLSKYEDDNSNMKTKKQMSEHLSQKEKELKNKENFIFDKYESGIYSDELFLKRKAALDEEFKELQNAKNELNGLQDTQSEIDSNTVRNNINKIIDQYHIESSSEKKNELLRMVLKDVIVNMTQKRKGPIPAQFEITPILRFNFIFDLTATNSFH GT:EXON 1|1-545:0| BL:SWS:NREP 2 BL:SWS:REP 174->356|CISA_BACSU|9e-15|34.1|167/500| BL:SWS:REP 387->515|RAD50_THEVO|8e-05|28.7|115/895| SEG 141->155|fmareefemtrermt| SEG 371->386|ldylsslndlndstlt| RP:PDB:NREP 1 RP:PDB:REP 15->138|3bvpA|1e-08|21.0|119/136| RP:PFM:NREP 1 RP:PFM:REP 189->293|PF07508|5e-14|47.4|97/103|Recombinase| HM:PFM:NREP 3 HM:PFM:REP 189->298|PF07508|2.5e-24|37.6|101/102|Recombinase| HM:PFM:REP 16->167|PF00239|2.7e-17|25.2|139/141|Resolvase| HM:PFM:REP 378->511|PF10009|0.00044|15.4|123/385|DUF2252| RP:SCP:NREP 1 RP:SCP:REP 15->120|1gdtA2|1e-06|24.4|90/140|c.53.1.1| HM:SCP:REP 13->168|2gm4A2|1.2e-17|25.0|140/0|c.53.1.1|1/1|Resolvase-like| OP:NHOMO 187 OP:NHOMOORG 104 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------2------------------1--------------------------11----------------------------------------------------34-----------------------------------------------221-----14-3113-311-21-2--114-2---1--1--11----------------21121------------11------------1-1-21---1112111--1-11----114211--11---2-1--514111----1--155652-2--223-1-61--2623--1--3-------------------1--1------------------------------1--------------1--1---------------------------------------------------2-32---1--------------------------------------------------------------------------------2----------1------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------1-1-------------------------1---1-------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ STR:NPRED 122 STR:RPRED 22.4 SQ:SECSTR ##############EEEEEEEccccGGGcccc#cccHHHHHHHHHHHHHHTTcEEEEEEEETccccccccHHHHHHHHGGGGTcccEEEEccHHHHcc#cHHHHHHHHHHTTGGGTcEEETTTTEETTcHHHHHHHHH####################################################################################################################################################################################################################################################################################################################################################################################################################### DISOP:02AL 1-2, 6-7, 263-265, 295-312, 398-408, 544-545| PSIPRED cccccccccccccEEEEEEEEccHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccEEEEEEEccEEEcccccccccccccEEEEcccccccccHHHHHHHHHHHHHcccccccccccccccEEccEEccccccccEEccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcEEEEEEcccEEEcccEEEEEEEEcccccEEEEEEccccc //