[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Bacillus subtilis subsp. subtilis str. 168 (bsub0)
Gene : ypsC
DDBJ      :ypsC         putative methylase with RNA interaction domain
Swiss-Prot:YPSC_BACSU   RecName: Full=Putative RNA methyltransferase ypsC;         EC=2.1.1.-;

Homologs  Archaea  11/68 : Bacteria  550/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
c.66.1
:385 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->372 3k0bA PDBj e-133 66.5 %
:RPS:PDB   68->161 2dirA PDBj 4e-16 13.6 %
:RPS:PDB   166->375 3a25A PDBj 1e-08 18.1 %
:RPS:SCOP  70->334 2ar0A1  c.66.1.45 * 2e-12 8.6 %
:HMM:SCOP  141->362 1o9gA_ c.66.1.29 * 4.3e-38 35.1 %
:RPS:PFM   165->350 PF01170 * UPF0020 7e-54 54.6 %
:HMM:PFM   164->369 PF01170 * UPF0020 6.5e-63 47.0 168/171  
:HMM:PFM   60->155 PF02926 * THUMP 3.7e-10 20.2 89/93  
:BLT:SWISS 1->385 YPSC_BACSU 0.0 100.0 %
:PROS 301->307|PS00092|N6_MTASE
:PROS 197->208|PS01261|UPF0020

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID CAB14134.1 GT:GENE ypsC GT:PRODUCT putative methylase with RNA interaction domain GT:DATABASE GIB00011CH01 GT:ORG bsub0 GB:ACCESSION GIB00011CH01 GB:LOCATION complement(2330075..2331232) GB:FROM 2330075 GB:TO 2331232 GB:DIRECTION - GB:GENE ypsC GB:PRODUCT putative methylase with RNA interaction domain GB:NOTE Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme GB:PROTEIN_ID CAB14134.1 GB:DB_XREF GOA:P50840 InterPro:IPR004114 SubtiList:BG11455 UniProtKB/Swiss-Prot:P50840 GB:GENE:GENE ypsC LENGTH 385 SQ:AASEQ MKKYTLIATAPMGIEAVVAKEVRDLGYECKVDNGKVIFEGDALAICRANLWLRTADRIKVQVASFKAKTFDELFEKTKAINWRSFIPENGKFPVIGKSVKSTLASVPDCQRIVKKAIVEKLKLQSGKANDWIEETGAEYKVEISLLKDQALITLDSSGTGLHKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAALIGQNIAPGFNRDFVSEDWEWIGKDLWNKARLEVEEKANYDQPLTIFASDIDHRMVQIAKENAEEAGLGDLIQFKQMQVKDFTTNLEFGVIVGNPPYGERLGEKKAVEQMYKEMGQAFEPLDTWSVYMLTSNENFEEAYGRKATKKRKLFNGFIKTDYYQYWSKVRPQRKKTENA GT:EXON 1|1-385:0| SW:ID YPSC_BACSU SW:DE RecName: Full=Putative RNA methyltransferase ypsC; EC=2.1.1.-; SW:GN Name=ypsC; OrderedLocusNames=BSU22170; SW:KW Complete proteome; Methyltransferase; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->385|YPSC_BACSU|0.0|100.0|385/385| GO:SWS:NREP 2 GO:SWS GO:0008168|"GO:methyltransferase activity"|Methyltransferase| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| PROS 301->307|PS00092|N6_MTASE|PDOC00087| PROS 197->208|PS01261|UPF0020|PDOC00969| BL:PDB:NREP 1 BL:PDB:REP 2->372|3k0bA|e-133|66.5|358/374| RP:PDB:NREP 2 RP:PDB:REP 68->161|2dirA|4e-16|13.6|88/98| RP:PDB:REP 166->375|3a25A|1e-08|18.1|171/264| RP:PFM:NREP 1 RP:PFM:REP 165->350|PF01170|7e-54|54.6|185/193|UPF0020| HM:PFM:NREP 2 HM:PFM:REP 164->369|PF01170|6.5e-63|47.0|168/171|UPF0020| HM:PFM:REP 60->155|PF02926|3.7e-10|20.2|89/93|THUMP| RP:SCP:NREP 1 RP:SCP:REP 70->334|2ar0A1|2e-12|8.6|245/485|c.66.1.45| HM:SCP:REP 141->362|1o9gA_|4.3e-38|35.1|185/0|c.66.1.29|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 586 OP:NHOMOORG 576 OP:PATTERN -----------------------1-------1---11-----------------1-11-11---11-- --------------------------------------------------------------------------------11------1111-111---111111111-1--------------1---------------------111-111--1111111111-1--11111111111111---------1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111-1111-11-1-1-1-1--------------------------------------------------------------1111-----11---------------------------------------------------11-1111111111111111111111111111111111111111111111111111111111111111111122211-11--1----11111112122222111---------------------------111111111111111111111111111111--1-1--1--11111111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11-----11111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111--1-111111--------1---------------------------1--11-1------ -----1------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------111111---1--1--2111---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 374 STR:RPRED 97.1 SQ:SECSTR #ccEccccHHHHHHHHHHHHHHHHHTcEEEEccccEEEEcTTccHHHHHHHHTTcTTEEEEEEEEEEHHHHHHHHHHHHHHHHHcTTcccEEEEEEEccccccccHHHHHHHHHHHHHHHcTHHHTccTcEEccccccEEEEEEEETTEEEEEEEEcccTTccccccTTTTEcccHHHHHHHHHHHcTEEEEEEEEETTTccHHHHHHHHHHHHHHGGcccEEEEEEEcHHHHHHHHHHTcHHHHHHccGGGHHHHEEEEHHHHHHHHHHHHHHHTTcccGGGTccEEEccTTcHHHEEEEEEccccTTccccccccccccccccHHHHHEEEEEEEEEEEEHHHHHccTHHHHHHHHHHHEEEEEEEcccccEE########## DISOP:02AL 373-385| PSIPRED ccEEEEEEEccccHHHHHHHHHHHcccEEEEEccEEEEEEcHHHHHHHHHHHccHHHEEEEEEEEccccHHHHHHHHHHcccHHHcccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEccEEEEEEEcccccHHHccccccccccccHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHcccccEEEEEEccHHHccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHcccccccEEEEEccEEEEEEEEEccccccccccccc //