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Corynebacterium glutamicum R (cglu2)
Gene : BAF53548.1
DDBJ      :             hypothetical protein
Swiss-Prot:RL1_CORGL    RecName: Full=50S ribosomal protein L1;

Homologs  Archaea  17/68 : Bacteria  909/915 : Eukaryota  100/199 : Viruses  0/175   --->[See Alignment]
e.24.1
:236 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->227 2hw8A PDBj 2e-55 52.0 %
:RPS:PDB   6->227 1ad2A PDBj 3e-62 45.0 %
:RPS:SCOP  6->227 1ad2A  e.24.1.1 * 1e-62 45.0 %
:HMM:SCOP  6->228 1ad2A_ e.24.1.1 * 1.5e-79 51.6 %
:RPS:PFM   21->220 PF00687 * Ribosomal_L1 2e-40 48.2 %
:HMM:PFM   20->221 PF00687 * Ribosomal_L1 1.1e-83 57.9 202/209  
:BLT:SWISS 1->236 RL1_CORGL e-122 100.0 %
:PROS 121->139|PS01199|RIBOSOMAL_L1
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID BAF53548.1 GT:GENE BAF53548.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00498CH01 GT:ORG cglu2 GB:ACCESSION GIB00498CH01 GB:LOCATION 639606..640316 GB:FROM 639606 GB:TO 640316 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAF53548.1 LENGTH 236 SQ:AASEQ MSKNSKAYREAAEKIDAGRIYSPLEAANLVKETSSKNYDASIDVAIRLGVDPRKADQLVRGTVSLPNGTGKTVRVAVFAQGEKATEAEAAGADFVGTDELVEKIQGGWTDFDVAIATPDQMAKIGRIARVLGPRGLMPNPKTGTVTNDVAKAIEEVKGGKISFRVDKASNLHAAIGKASFDAKKLAENYGALLDEIIRIKPSSAKGIYVKRVTLSSTTGPGVEVDTHVTKNYAEEA GT:EXON 1|1-236:0| SW:ID RL1_CORGL SW:DE RecName: Full=50S ribosomal protein L1; SW:GN Name=rplA; OrderedLocusNames=Cgl0477, cg0564; SW:KW Complete proteome; Repressor; Ribonucleoprotein; Ribosomal protein;RNA-binding; rRNA-binding; Translation regulation; tRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->236|RL1_CORGL|e-122|100.0|236/236| GO:SWS:NREP 6 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| GO:SWS GO:0006417|"GO:regulation of translation"|Translation regulation| GO:SWS GO:0000049|"GO:tRNA binding"|tRNA-binding| PROS 121->139|PS01199|RIBOSOMAL_L1|PDOC00922| SEG 79->92|aqgekateaeaaga| BL:PDB:NREP 1 BL:PDB:REP 3->227|2hw8A|2e-55|52.0|223/225| RP:PDB:NREP 1 RP:PDB:REP 6->227|1ad2A|3e-62|45.0|222/224| RP:PFM:NREP 1 RP:PFM:REP 21->220|PF00687|2e-40|48.2|197/206|Ribosomal_L1| HM:PFM:NREP 1 HM:PFM:REP 20->221|PF00687|1.1e-83|57.9|202/209|Ribosomal_L1| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF00687|IPR002143| GO:PFM GO:0006396|"GO:RNA processing"|PF00687|IPR002143| RP:SCP:NREP 1 RP:SCP:REP 6->227|1ad2A|1e-62|45.0|222/224|e.24.1.1| HM:SCP:REP 6->228|1ad2A_|1.5e-79|51.6|223/224|e.24.1.1|1/1|Ribosomal protein L1| OP:NHOMO 1079 OP:NHOMOORG 1026 OP:PATTERN --------------1-1------1---------11-------------11111-1-1111--11---- 1111111111111111111-11111111111112121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111-11-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 11------1---11111111111111-1111-1111111111111111------111--1-11111111-11111111111--11-11-12-11-1111---1111--3----------------------------------------------------------------112222Q1-2223234-32112111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 227 STR:RPRED 96.2 SQ:SECSTR ccccccccTTTTTcccTTccccHHHHHHHHHTTcccccccEEEEEEEEcccTTcGGGccEEEEEccccccTTccEEEEccTHHHHHHHHTTccEEEcGGGHHHHHTTcccccEEEEcGGGHHHHHHHHHHHHHHTccccTTTTcccccHHHHHHHHHTTEEEEEccTTcEEEEEEEETTccHHHHHHHHHHHHHHHHTTccTTcccccEEEEEEEcTTcccEEEcTT######### DISOP:02AL 1-4,232-237| PSIPRED cccHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccEEEEEEEccccccccccEEEEEEcccccccccEEEEEccHHHHHHHHHcccccccHHHHHHHHHcccccccEEEEcHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccccccEEEcHHHHHHHHHcc //