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Corynebacterium glutamicum R (cglu2)
Gene : BAF53560.1
DDBJ      :             hypothetical protein
Swiss-Prot:RPOC_CORGB   RecName: Full=DNA-directed RNA polymerase subunit beta';         Short=RNAP subunit beta';         EC=2.7.7.6;AltName: Full=Transcriptase subunit beta';AltName: Full=RNA polymerase subunit beta';

Homologs  Archaea  68/68 : Bacteria  906/915 : Eukaryota  195/199 : Viruses  2/175   --->[See Alignment]
e.29.1
:1333 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->168 1l9uD PDBj 4e-50 57.1 %
:BLT:PDB   226->1284 2ghoD PDBj 0.0 49.3 %
:RPS:PDB   3->155 2e2hA PDBj 3e-34 17.3 %
:RPS:PDB   198->313 3bmaB PDBj 2e-04 15.5 %
:RPS:PDB   306->1293 1ddqD PDBj 0.0 52.5 %
:RPS:SCOP  7->160 2ghoD1  e.29.1.2 * 7e-68 57.8 %
:RPS:SCOP  214->1300 2ghoD1  e.29.1.2 * 0.0 50.3 %
:HMM:SCOP  1->1288 1i50A_ e.29.1.2 * 0 43.6 %
:RPS:PFM   8->136,216->416 PF04997 * RNA_pol_Rpb1_1 3e-57 58.2 %
:RPS:PFM   419->561 PF00623 * RNA_pol_Rpb1_2 2e-36 57.3 %
:RPS:PFM   564->746 PF04983 * RNA_pol_Rpb1_3 3e-12 38.0 %
:RPS:PFM   775->832 PF05000 * RNA_pol_Rpb1_4 1e-04 37.9 %
:RPS:PFM   853->1066,1123->1244 PF04998 * RNA_pol_Rpb1_5 6e-53 54.2 %
:HMM:PFM   7->417 PF04997 * RNA_pol_Rpb1_1 5.8e-93 40.3 325/338  
:HMM:PFM   853->1243 PF04998 * RNA_pol_Rpb1_5 1.3e-63 32.6 273/277  
:HMM:PFM   419->560 PF00623 * RNA_pol_Rpb1_2 1.6e-52 46.5 142/166  
:HMM:PFM   564->746 PF04983 * RNA_pol_Rpb1_3 2e-26 33.6 146/157  
:HMM:PFM   787->836 PF05000 * RNA_pol_Rpb1_4 9.4e-07 28.0 50/108  
:BLT:SWISS 1->1333 RPOC_CORGB 0.0 100.0 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID BAF53560.1 GT:GENE BAF53560.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00498CH01 GT:ORG cglu2 GB:ACCESSION GIB00498CH01 GB:LOCATION 656919..660920 GB:FROM 656919 GB:TO 660920 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAF53560.1 LENGTH 1333 SQ:AASEQ MLDVNVFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWECACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLDLIIYFGANIITSVDEEARHSDQTTLEAEMLLEKKDVEADAESDIAERAEKLEEDLAELEAAGAKADARRKVQAAADKEMQHIRERAQREIDRLDEVWQTFIKLAPKQMIRDEKLYDELIDRYEDYFTGGMGAESIEALIQNFDLDAEAEELRDIINNGKGQKKMRALKRLKVVAAFQRSGNDPAGMVLNAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIELGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQRPEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQMAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYYLTLEKSSEEFGGQGAYQPADENGPEKGVYSSLAEAIMAYDRGVLGLQAPVRIRLNHLRPPAEVEAEQFPDGWNQGETWLAHTTLGRVMFNEILPWNYPYLEGIMVRKGGGSDKIMLGDVVNDLAAKYPMITVAQTMDKMKDAGFYWSTRSGVTIAMSDVLVLPNKEEMLDRYEESARQIEVKYNRGKLTGRERYDRLVELWKDATDEVGQAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKGDYITRPIKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRVEDCGTRQGVRVPVAAEVLDATGAVTGYTRHDLIETSVSGRVLAGDATNAAGEVVLAAGTDLTELNIDLLVEAGIKDVKVRSVLTCQTPTGVCAKCYGKSMASGQQVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNCAPIASVEGVIHLEDEGNFYTLTIVPDDGSDNVVYEKLSKRQGLASTRVAMESNAGAFIERTLTEGDRVTVGQRLLRGAADPHDVLEILGRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPGSLVDLSEAKLANSEAIGAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENVIIGKLIPAGTGISRYRNISIKPTEAARNAAYSIPTYGESIYGDDGFGEFTGASVPLDEAF GT:EXON 1|1-1333:0| SW:ID RPOC_CORGB SW:DE RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6;AltName: Full=Transcriptase subunit beta';AltName: Full=RNA polymerase subunit beta'; SW:GN Name=rpoC; OrderedLocusNames=cgR_0592; SW:KW Complete proteome; DNA-directed RNA polymerase;Nucleotidyltransferase; Transcription; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->1333|RPOC_CORGB|0.0|100.0|1333/1333| GO:SWS:NREP 4 GO:SWS GO:0003899|"GO:DNA-directed RNA polymerase activity"|DNA-directed RNA polymerase| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| COIL:NAA 15 COIL:NSEG 1 COIL:REGION 178->192| SEG 171->196|aeraekleedlaeleaagakadarrk| BL:PDB:NREP 2 BL:PDB:REP 9->168|1l9uD|4e-50|57.1|158/1183| BL:PDB:REP 226->1284|2ghoD|0.0|49.3|1010/1196| RP:PDB:NREP 3 RP:PDB:REP 3->155|2e2hA|3e-34|17.3|133/1398| RP:PDB:REP 198->313|3bmaB|2e-04|15.5|103/393| RP:PDB:REP 306->1293|1ddqD|0.0|52.5|938/1077| RP:PFM:NREP 5 RP:PFM:REP 8->136,216->416|PF04997|3e-57|58.2|304/326|RNA_pol_Rpb1_1| RP:PFM:REP 419->561|PF00623|2e-36|57.3|143/166|RNA_pol_Rpb1_2| RP:PFM:REP 564->746|PF04983|3e-12|38.0|137/145|RNA_pol_Rpb1_3| RP:PFM:REP 775->832|PF05000|1e-04|37.9|58/107|RNA_pol_Rpb1_4| RP:PFM:REP 853->1066,1123->1244|PF04998|6e-53|54.2|325/471|RNA_pol_Rpb1_5| HM:PFM:NREP 5 HM:PFM:REP 7->417|PF04997|5.8e-93|40.3|325/338|RNA_pol_Rpb1_1| HM:PFM:REP 853->1243|PF04998|1.3e-63|32.6|273/277|RNA_pol_Rpb1_5| HM:PFM:REP 419->560|PF00623|1.6e-52|46.5|142/166|RNA_pol_Rpb1_2| HM:PFM:REP 564->746|PF04983|2e-26|33.6|146/157|RNA_pol_Rpb1_3| HM:PFM:REP 787->836|PF05000|9.4e-07|28.0|50/108|RNA_pol_Rpb1_4| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF04997|IPR007080| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04997|IPR007080| GO:PFM GO:0006350|"GO:transcription"|PF04997|IPR007080| GO:PFM GO:0003677|"GO:DNA binding"|PF00623|IPR000722| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF00623|IPR000722| GO:PFM GO:0006350|"GO:transcription"|PF00623|IPR000722| GO:PFM GO:0003677|"GO:DNA binding"|PF04983|IPR007066| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04983|IPR007066| GO:PFM GO:0006350|"GO:transcription"|PF04983|IPR007066| GO:PFM GO:0003677|"GO:DNA binding"|PF05000|IPR007083| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF05000|IPR007083| GO:PFM GO:0006350|"GO:transcription"|PF05000|IPR007083| GO:PFM GO:0003677|"GO:DNA binding"|PF04998|IPR007081| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04998|IPR007081| GO:PFM GO:0006350|"GO:transcription"|PF04998|IPR007081| RP:SCP:NREP 2 RP:SCP:REP 7->160|2ghoD1|7e-68|57.8|152/1196|e.29.1.2| RP:SCP:REP 214->1300|2ghoD1|0.0|50.3|1038/1196|e.29.1.2| HM:SCP:REP 1->1288|1i50A_|0|43.6|1069/1449|e.29.1.2|1/1|beta and beta-prime subunits of DNA dependent RNA-polymerase| OP:NHOMO 1756 OP:NHOMOORG 1171 OP:PATTERN 22121222222222221111111222221121122212111122214222222121212222221111 1111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111--1-1111-11111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 35233313934233333242333333333232333333333333333333333233333333222323123233232-3232222133-34332323333333334335462533333313333562324K3-3453322333222323241153123235K633H3323G33634373W333-585293472353333 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-- STR:NPRED 1286 STR:RPRED 96.5 SQ:SECSTR ##ccccccEEEEccccHHHHHHHEEEEccccccccTTccccccccTTcTTTTccccccccccccccccTTTTccccccccccccTHHHHHcEEEEEEEEEEEcHHHHcccccHHHHHTTccTTHHHHHHHHcccEEEcccccHHHTTcccEETTTcccccccccc###############################HHHHcGGGTccEEEcccccccccEEccccccccccccccccccccccccccccccccEEccHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccTccEEEccTTcccGGGTTTTTcHHHHHHHHTTTcccccccTHHHHHHHHHHHHHHHHHTTccccccccccccccccccTTTTTTTccccccTTcccccccccEEEEEEEccccTTTcccccTTHHHHHHHHHHHHHHHHTcccccHHHHHHHTcccccHHHTTHHHHTTTccEEccccccccGGGTcEEcccccccccEEEcTTTHHHHcccccccEEEEcccccGGGTTTTcccccTTTcccccTTccccccccTTTHHHHHHTccccccccccccHHHHHHHHHcTcccccccccHHHHHTTcccccccccccccccccccccccccccccTTTHHHHHccccccHHHHHHHHHHHHHTTcTTTTcccccTTccccHHHHHHHHHHTTcTHHHHHHHHHHHHHHHHHHHHHHccccccTTTcccTTHHHHHHHTTTTTHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHHHccccTcccTTTTTTcccccHHHHHHHcccccccccTTcccccccccTTccccTTcTTHHHHHHHHHHTTTGGGTTTTTcccTHHHHHHTTTTcccccccccccccEEEEccEEGGcTTTccEEcccHHHHHHHHTTccccEEETcccccccEEEcccccHHHHHHHHHTcccEEEEccccccccTTTcccccccccTTcccccccccccHHHHGGGGTTGGGcccccccccccccccccccHHHHHHHHTTcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcEcTTcccccHccccccccccccTTcccccccHHHHccHHHHHHHHHHHHHHHHHHTTccccTTcTHHHHHHHHTcEEEEccccccccccccEEHHHHHHHHHTTTcccccccccEEEccccTHHHHHcccccTTTTTcccTTHHHHHHHHccccGGGGccTTHHHHTcccccccccccccccTTEEEEEEEEcTTccE#EEEEEEEEEccc############# DISOP:02AL 1-2,331-331,333-334,388-402,1327-1327,1330-1334| PSIPRED ccccccccEEEEEcccHHHHHHcccEEEEcccEEEcccccccccccccHHHcccccccEEccccccccccccccccccccccccccccccccEEEEEcccEEcHHHHHHHHHHHHHHHcccHHHHHHHHHHcccEEccccccHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHcccccccccccccHHHHHHHHHHccccEEEcccHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHccccccccEEEEEEEccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcHHHHHcccccccccccEEEcccccEEEcEEcccHHHHHHHcccEEcHHHHHccccccccHHHHHHHHHccccccHHHHHccccEEEEEcccccccccccEEEEEEEcccEEEEcHHHcccccccccccEEEEEccccHHHHHHHHHHHcccccEEccccccEEEEEHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccEEEEEccccccccccccccccccccccccEEEcccccccEEccEEccccHHHHccHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccEEEEccEEccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHccccccccccccccccccHHHHHccccHHHHHHHHHHccHHHEEccccccccccHHHHHHHHHccEEEEEccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHcccccEEEccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHccEEEccccccEEEEccEEEEEccccEEEEEEEcccccEEEEEEEccEEEEEEEEEEEEEEcccccEEEEEccccEEEcccEEEEccccHHHHHHHccHHHHHHHHHHHHHHHEEcccEEccHHHHHHHHHHHHccEEEEccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEEcEEcHHcccccHHHccccccHHHHHHHHHHcccccccccccccEEEcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccc 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