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Corynebacterium glutamicum R (cglu2)
Gene : BAF53653.1
DDBJ      :             hypothetical protein
Swiss-Prot:RS4_CORGB    RecName: Full=30S ribosomal protein S4;

Homologs  Archaea  16/68 : Bacteria  910/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
d.66.1
:201 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->201 2j00D PDBj 2e-47 48.2 %
:RPS:PDB   1->201 3bbnD PDBj 2e-38 35.7 %
:RPS:SCOP  2->201 1fjgD  d.66.1.2 * 2e-40 48.0 %
:HMM:SCOP  2->201 1fjgD_ d.66.1.2 * 1.8e-64 46.0 %
:RPS:PFM   33->90 PF00163 * Ribosomal_S4 3e-08 53.4 %
:RPS:PFM   92->137 PF01479 * S4 6e-11 52.2 %
:HMM:PFM   2->90 PF00163 * Ribosomal_S4 1.9e-21 38.2 89/94  
:HMM:PFM   92->138 PF01479 * S4 1e-20 55.3 47/48  
:BLT:SWISS 1->201 RS4_CORGB e-114 100.0 %
:PROS 89->113|PS00632|RIBOSOMAL_S4

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID BAF53653.1 GT:GENE BAF53653.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00498CH01 GT:ORG cglu2 GB:ACCESSION GIB00498CH01 GB:LOCATION 740289..740894 GB:FROM 740289 GB:TO 740894 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAF53653.1 LENGTH 201 SQ:AASEQ MARYTGPATRKSRRLRVDLVGGDMAFERRPYPPGQAGRARIKESEYLLQLQEKQKARFIYGVMEKQFRRYYAEANRRAGKTGENLVVLLESRLDNVVYRAGLANTRRQARQLVSHGHFTVNGKAIDVPSFRVSQYDIINVREKSQKMNWFEEAQDNLVDAVVPAWLQVVPENLRILVHQLPERAQIDIPLQEQLIVEFYSK GT:EXON 1|1-201:0| SW:ID RS4_CORGB SW:DE RecName: Full=30S ribosomal protein S4; SW:GN Name=rpsD; OrderedLocusNames=cgR_0682; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->201|RS4_CORGB|e-114|100.0|201/201| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 89->113|PS00632|RIBOSOMAL_S4|PDOC00549| BL:PDB:NREP 1 BL:PDB:REP 3->201|2j00D|2e-47|48.2|199/208| RP:PDB:NREP 1 RP:PDB:REP 1->201|3bbnD|2e-38|35.7|199/199| RP:PFM:NREP 2 RP:PFM:REP 33->90|PF00163|3e-08|53.4|58/93|Ribosomal_S4| RP:PFM:REP 92->137|PF01479|6e-11|52.2|46/46|S4| HM:PFM:NREP 2 HM:PFM:REP 2->90|PF00163|1.9e-21|38.2|89/94|Ribosomal_S4| HM:PFM:REP 92->138|PF01479|1e-20|55.3|47/48|S4| GO:PFM:NREP 3 GO:PFM GO:0005622|"GO:intracellular"|PF00163|IPR001912| GO:PFM GO:0019843|"GO:rRNA binding"|PF00163|IPR001912| GO:PFM GO:0003723|"GO:RNA binding"|PF01479|IPR002942| RP:SCP:NREP 1 RP:SCP:REP 2->201|1fjgD|2e-40|48.0|200/208|d.66.1.2| HM:SCP:REP 2->201|1fjgD_|1.8e-64|46.0|200/208|d.66.1.2|1/1|Alpha-L RNA-binding motif| OP:NHOMO 969 OP:NHOMOORG 932 OP:PATTERN --------111111-----------11----------1-1111-11--1------------------- 1111111111111111111-11111111111111111111111211111111111111112211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111113231222222212111222222111112111111111111111111111211111111111111111111111111111111111-11111111111111111111211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111222111111111211121211111111111111111111111111122111111111111111111111111111111111111111211111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------1-1----------1-1--2------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 201 STR:RPRED 100.0 SQ:SECSTR ccccccccTTcccccccccccccccTccccccccccccccccccTTHHHHTTHHHHHHHHTccHHHHHHHHHHHHHccccTTTTTTHHHHccTTTTTTTTTcccccHHHHHHHHTTcEEETTEEcccTTccccTTEEEEEcccTTccHHHHHHcccTTTccccTTEEEETTTTEEEEcccccGGGccccccHHHHTTTccc DISOP:02AL 1-1,23-45| PSIPRED ccccccccEEEEHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccEEEccEEEEccccEEccccEEEEccccHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEEcccHHHcccccccEEEEEEEcc //