[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Corynebacterium glutamicum R (cglu2)
Gene : BAF54016.1
DDBJ      :             hypothetical protein
Swiss-Prot:RL25_CORGB   RecName: Full=50S ribosomal protein L25;AltName: Full=General stress protein CTC;

Homologs  Archaea  0/68 : Bacteria  377/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.53.1
:202 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->181 1vsaT PDBj 4e-13 29.7 %
:RPS:PDB   6->181 3d5bZ PDBj 5e-27 30.0 %
:RPS:SCOP  6->181 1feuA  b.53.1.1 * 2e-27 29.4 %
:HMM:SCOP  3->189 1feuA_ b.53.1.1 * 5.8e-47 35.9 %
:RPS:PFM   7->93 PF01386 * Ribosomal_L25p 1e-12 39.5 %
:HMM:PFM   7->94 PF01386 * Ribosomal_L25p 1.8e-26 37.9 87/88  
:BLT:SWISS 1->181 RL25_CORGB e-100 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID BAF54016.1 GT:GENE BAF54016.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00498CH01 GT:ORG cglu2 GB:ACCESSION GIB00498CH01 GB:LOCATION complement(1148737..1149345) GB:FROM 1148737 GB:TO 1149345 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAF54016.1 LENGTH 202 SQ:AASEQ MAKYQTIEAAVRSEFGKGSARRARVAGQIPAVVYGADVESNLHVTVDHRTFAALVRQEGVNAVLELDIEGQKHLTMIKHIDQNVLTFNIDHLDLLAIKRGEKVEVDVPVIVEGEPAPGTMWVQDADTIKVEADVLSIPEEFKVSIEGLEFGAQVTAADIELDGDTTLVEDPETLIVNIVYPEVEAEETEDDEAASEGEEAAE GT:EXON 1|1-202:0| SW:ID RL25_CORGB SW:DE RecName: Full=50S ribosomal protein L25;AltName: Full=General stress protein CTC; SW:GN Name=rplY; Synonyms=ctc; OrderedLocusNames=cgR_1040; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->181|RL25_CORGB|e-100|100.0|181/202| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| SEG 182->201|eveaeeteddeaasegeeaa| BL:PDB:NREP 1 BL:PDB:REP 7->181|1vsaT|4e-13|29.7|172/185| RP:PDB:NREP 1 RP:PDB:REP 6->181|3d5bZ|5e-27|30.0|170/188| RP:PFM:NREP 1 RP:PFM:REP 7->93|PF01386|1e-12|39.5|86/88|Ribosomal_L25p| HM:PFM:NREP 1 HM:PFM:REP 7->94|PF01386|1.8e-26|37.9|87/88|Ribosomal_L25p| GO:PFM:NREP 5 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF01386|IPR020055| GO:PFM GO:0005622|"GO:intracellular"|PF01386|IPR020055| GO:PFM GO:0005840|"GO:ribosome"|PF01386|IPR020055| GO:PFM GO:0006412|"GO:translation"|PF01386|IPR020055| GO:PFM GO:0008097|"GO:5S rRNA binding"|PF01386|IPR020055| RP:SCP:NREP 1 RP:SCP:REP 6->181|1feuA|2e-27|29.4|170/185|b.53.1.1| HM:SCP:REP 3->189|1feuA_|5.8e-47|35.9|181/185|b.53.1.1|1/1|Ribosomal protein L25-like| OP:NHOMO 389 OP:NHOMOORG 377 OP:PATTERN -------------------------------------------------------------------- 111-111111111111111-1111111111111111111111111111111111111111111111111111111111----1-------1-1111----1-1---1------------------11--------1---11---1--------------------------------------11111-11-11---------------111111---111111111111111111111111111111111111---------------------------------------------------------------------121-12222222121----211--1-112--11---111111111111--1-1----1----11-----------11111111111---------1111111111111111--11--1-11111-1--------111---1-11-11111--11-1111-1--1--11111111111-----1--1-11----1111-------111111-1111---11-1111-11-1111--111111111111-111111-1--1----1-1111-111111111--------------------------1111-1--11111---------------------111-1----------1---------------------------------------------------------------------------------1---------1--1-----------------------111-111111--1-11111------------1--------------111111111-----1111------1111111111--------------------------1-111-1-1-1-1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 176 STR:RPRED 87.1 SQ:SECSTR #####EEccEEcccccHHHHHHHHHTTEEEEEEEcccTTccEEEEEEHHHHHHHHHHHTTTccEEEEcTccEEEEEcccEEEETTTTEEEEEEEEEccccccEEEEEEEEEccccHTTcccEEcccEEEEEEcTTcccccEEEcTTcccTTccEEGGGccccTTEEccccTTcEEEEcccc##################### DISOP:02AL 1-1,14-19,181-203| PSIPRED ccEEEEEEEEEEcccccHHHHHHHHcccccEEEEcccccccEEEEEcHHHHHHHHHccccEEEEEEEEccEEEEEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEcHHHcccEEEEEEcccccccEEEEEEEEcccccEEEcccccEEEEEEccccccccccccccccccccccc //