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Corynebacterium glutamicum R (cglu2)
Gene : BAF54798.1
DDBJ      :             hypothetical protein
Swiss-Prot:PNP_CORGB    RecName: Full=Polyribonucleotide nucleotidyltransferase;         EC=2.7.7.8;AltName: Full=Polynucleotide phosphorylase;         Short=PNPase;

Homologs  Archaea  31/68 : Bacteria  862/915 : Eukaryota  83/199 : Viruses  0/175   --->[See Alignment]
a.4.9b.40.4d.101.1d.14.1d.51.1
:753 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->743 1e3pA PDBj 0.0 65.0 %
:RPS:PDB   17->629 1e3hA PDBj 0.0 63.4 %
:RPS:PDB   623->746 2ba0B PDBj 4e-13 15.6 %
:RPS:SCOP  15->160 1e3hA2  d.14.1.4 * 5e-21 65.1 %
:RPS:SCOP  162->283 1e3hA5  d.101.1.1 * 3e-24 56.9 %
:RPS:SCOP  285->374 1e3hA1  a.4.9.1 * 3e-14 34.9 %
:RPS:SCOP  375->511 1e3hA3  d.14.1.4 * 3e-41 81.0 %
:RPS:SCOP  512->605 1e3hA6  d.101.1.1 * 4e-20 73.4 %
:RPS:SCOP  605->712 1k1gA  d.51.1.1 * 4e-12 14.2 %
:RPS:SCOP  685->747 1t9hA1  b.40.4.5 * 9e-08 8.3 %
:HMM:SCOP  12->160 1e3hA2 d.14.1.4 * 1.4e-50 43.6 %
:HMM:SCOP  161->284 1e3hA5 d.101.1.1 * 2.2e-22 33.3 %
:HMM:SCOP  272->379 1whuA_ a.4.9.1 * 1.3e-21 36.3 %
:HMM:SCOP  355->509 1e3hA2 d.14.1.4 * 2.2e-40 44.7 %
:HMM:SCOP  503->607 1e3hA6 d.101.1.1 * 5.9e-23 36.5 %
:HMM:SCOP  596->694 1we8A_ d.51.1.1 * 9.5e-19 32.3 %
:HMM:SCOP  677->746 1go3E1 b.40.4.5 * 1.8e-16 52.9 %
:RPS:PFM   75->160 PF01138 * RNase_PH 3e-07 34.9 %
:RPS:PFM   288->372 PF03726 * PNPase 4e-04 31.7 %
:RPS:PFM   378->509 PF01138 * RNase_PH 3e-17 38.6 %
:RPS:PFM   513->586 PF03725 * RNase_PH_C 7e-06 47.7 %
:RPS:PFM   676->712 PF00575 * S1 4e-06 51.4 %
:HMM:PFM   29->160 PF01138 * RNase_PH 4.2e-20 35.5 124/132  
:HMM:PFM   377->509 PF01138 * RNase_PH 5.4e-18 29.5 129/132  
:HMM:PFM   289->373 PF03726 * PNPase 2.8e-17 30.9 81/83  
:HMM:PFM   677->746 PF00575 * S1 1e-15 40.6 69/74  
:HMM:PFM   612->668 PF00013 * KH_1 1.9e-15 43.6 55/57  
:HMM:PFM   163->228 PF03725 * RNase_PH_C 8.1e-06 30.6 49/68  
:HMM:PFM   512->586 PF03725 * RNase_PH_C 7.4e-09 31.8 66/68  
:BLT:SWISS 1->753 PNP_CORGB 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID BAF54798.1 GT:GENE BAF54798.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00498CH01 GT:ORG cglu2 GB:ACCESSION GIB00498CH01 GB:LOCATION complement(2001955..2004216) GB:FROM 2001955 GB:TO 2004216 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAF54798.1 LENGTH 753 SQ:AASEQ MSDVKYFEDTEFGLIEAVATIDNGDFGTRTIRFETGQLARQADGAVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQIVVTVMSMNPEDYYDVVAINGASAATRISGLPVSGAVGGVRMALVVDEKHPEGQWVAFPTHAQHEQSVFEIVVAGRLVERKRGNKTFSDVAVMMVEAGASENVVNRVKDGAPAPTEKIVSDGLEAAKPFIDILCRAQEGLAQRVGNAAKEFPLFPPYTDEVYSAVERKVSKKLASLLTLKAKQERDDATNAYMEEIEAELLPKFEASYSSAAEASKEIRAAYNAVMKSIVRRMILTDHFRIDGRGVTDIRDLAVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLAPGDAKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALAERAVLPVIPSREEFPYSIRQVSEALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSGEIDGKTEYVALTDILGAEDAFGDMDFKVAGTADFITALQLDTKLDGIPSKVLSDALEQARDARLTILNTMADVINGPDEMSKFAPRITTVKIPVAKIGELIGPKGKNINALTEETGANISIEDDGTVFISAADGASAEAAIEKINALANPQLPKVGERFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGNGKRVEKVDDVVKVGEKIQVEIADIDNRGKISLVPVAEED GT:EXON 1|1-753:0| SW:ID PNP_CORGB SW:DE RecName: Full=Polyribonucleotide nucleotidyltransferase; EC=2.7.7.8;AltName: Full=Polynucleotide phosphorylase; Short=PNPase; SW:GN Name=pnp; OrderedLocusNames=cgR_1804; SW:KW Complete proteome; Cytoplasm; Nucleotidyltransferase; RNA-binding;Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->753|PNP_CORGB|0.0|100.0|753/753| GO:SWS:NREP 4 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| SEG 47->61|ttyldddtmllattt| SEG 298->310|skklaslltlkak| SEG 333->343|easyssaaeas| SEG 653->666|isaadgasaeaaie| SEG 715->730|gkrvekvddvvkvgek| BL:PDB:NREP 1 BL:PDB:REP 17->743|1e3pA|0.0|65.0|640/645| RP:PDB:NREP 2 RP:PDB:REP 17->629|1e3hA|0.0|63.4|577/585| RP:PDB:REP 623->746|2ba0B|4e-13|15.6|122/222| RP:PFM:NREP 5 RP:PFM:REP 75->160|PF01138|3e-07|34.9|81/130|RNase_PH| RP:PFM:REP 288->372|PF03726|4e-04|31.7|82/83|PNPase| RP:PFM:REP 378->509|PF01138|3e-17|38.6|127/130|RNase_PH| RP:PFM:REP 513->586|PF03725|7e-06|47.7|65/68|RNase_PH_C| RP:PFM:REP 676->712|PF00575|4e-06|51.4|37/74|S1| HM:PFM:NREP 7 HM:PFM:REP 29->160|PF01138|4.2e-20|35.5|124/132|RNase_PH| HM:PFM:REP 377->509|PF01138|5.4e-18|29.5|129/132|RNase_PH| HM:PFM:REP 289->373|PF03726|2.8e-17|30.9|81/83|PNPase| HM:PFM:REP 677->746|PF00575|1e-15|40.6|69/74|S1| HM:PFM:REP 612->668|PF00013|1.9e-15|43.6|55/57|KH_1| HM:PFM:REP 163->228|PF03725|8.1e-06|30.6|49/68|RNase_PH_C| HM:PFM:REP 512->586|PF03725|7.4e-09|31.8|66/68|RNase_PH_C| GO:PFM:NREP 13 GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF01138|IPR001247| GO:PFM GO:0003723|"GO:RNA binding"|PF01138|IPR001247| GO:PFM GO:0006396|"GO:RNA processing"|PF01138|IPR001247| GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF03726|IPR015848| GO:PFM GO:0003723|"GO:RNA binding"|PF03726|IPR015848| GO:PFM GO:0006396|"GO:RNA processing"|PF03726|IPR015848| GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF01138|IPR001247| GO:PFM GO:0003723|"GO:RNA binding"|PF01138|IPR001247| GO:PFM GO:0006396|"GO:RNA processing"|PF01138|IPR001247| GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF03725|IPR015847| GO:PFM GO:0003723|"GO:RNA binding"|PF03725|IPR015847| GO:PFM GO:0006396|"GO:RNA processing"|PF03725|IPR015847| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 7 RP:SCP:REP 15->160|1e3hA2|5e-21|65.1|146/149|d.14.1.4| RP:SCP:REP 162->283|1e3hA5|3e-24|56.9|109/111|d.101.1.1| RP:SCP:REP 285->374|1e3hA1|3e-14|34.9|83/83|a.4.9.1| RP:SCP:REP 375->511|1e3hA3|3e-41|81.0|137/137|d.14.1.4| RP:SCP:REP 512->605|1e3hA6|4e-20|73.4|94/96|d.101.1.1| RP:SCP:REP 605->712|1k1gA|4e-12|14.2|106/122|d.51.1.1| RP:SCP:REP 685->747|1t9hA1|9e-08|8.3|60/67|b.40.4.5| HM:SCP:REP 12->160|1e3hA2|1.4e-50|43.6|149/149|d.14.1.4|1/2|Ribosomal protein S5 domain 2-like| HM:SCP:REP 161->284|1e3hA5|2.2e-22|33.3|111/111|d.101.1.1|1/2|Ribonuclease PH domain 2-like| HM:SCP:REP 272->379|1whuA_|1.3e-21|36.3|102/0|a.4.9.1|1/1|Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3| HM:SCP:REP 355->509|1e3hA2|2.2e-40|44.7|132/149|d.14.1.4|2/2|Ribosomal protein S5 domain 2-like| HM:SCP:REP 503->607|1e3hA6|5.9e-23|36.5|96/0|d.101.1.1|2/2|Ribonuclease PH domain 2-like| HM:SCP:REP 596->694|1we8A_|9.5e-19|32.3|96/0|d.51.1.1|1/1|Eukaryotic type KH-domain (KH-domain type I)| HM:SCP:REP 677->746|1go3E1|1.8e-16|52.9|68/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 1041 OP:NHOMOORG 976 OP:PATTERN 11-----1111111-111-----1--------111-------------11-1111111111-11-1-- 1111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111----------------------11111111111111111111111-1111111111111111111111114111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111-1111111111111111111111111111-1111111111111111111111111111111--1---111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111---------------------1111111111111 ------1-----------------------------------------------------------------------------------------------------1121111-1111111112121791-131111111111111112111-1111---12-12311231212-12J222111113-322221111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 736 STR:RPRED 97.7 SQ:SECSTR #############cEEEEEEEEcGGGcEEEEEEEEccccTTccEEEEEEETTTEEEEEEEEEcccccTTcccccEEEEEEEcGGGGTcccccTTcccccccHHHHHHHHHHHHHHHHHccTTccccEEEEEEEEEccTTcccHHHHHHHHHHHHHHTTcccccccEEEEEEEETEEEETTTEEEEcccHHHHTTEEEEEEEEEEEcTTc####EcTTccEEEEEEEEcTTHHHHHHTTcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHTTTTcTTcHHccccccHHHHHHHHHHHHHHHHHHHHHTcccTTcccTTccccEEEEEcccccccEEEEEEETTEEEEEEEEEEGGGGcEEccccccccEEcEEEEEEccGGGGTcccccccccHHHHHHHHHHHHHHGGGcccTTTccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHTcccccccEEEEEEEEEEEETTEEEEEEEcccccHHHHHccEEEEEEEccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccTTccccccHHHHccccccccccccHHHHccGGGTccccccHHHHHHHHHHHHcTTccccccccHHHHHHGGcccHHHHccccEEEcccccEEccccccccccccccGccccccccHHHHccTccccccccccccccccEEEEEEcccT DISOP:02AL 1-3,96-96,413-422,440-457,593-606,750-754| PSIPRED cccEEEEccccccEEEEEEEEEEEEEccEEEEEEEcEEEcccccEEEEEEcccEEEEEEEEEcccccccccccEEEEEHHHHHHHccccccccEEEcccccccEEEEEEEccccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEEEEEEcccccccccEEEcccHHHHHHccccEEEEccccccccccccccccEEEEEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEcccccccEEEEEEEccEEEEEEEEcccccccccccccccccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEccccHHHHHHHHHHHHHHHcccHHHcccccEEEEEEEccccccccEEEEEEccccHHHcccccEEEEEccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcHHHHHHHccccccEEEEEEEccccEEEccccEEEEEEEEcHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEEEEEEEEccccccEEEEEEcccccccccHHHHcccccEEEEEEEEEcccccEEEEEEcccc //