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Corynebacterium glutamicum R (cglu2)
Gene : BAF55330.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  79/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:260 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   34->232 2g7uC PDBj 3e-06 32.2 %
:RPS:PDB   20->70 1biaA PDBj 9e-07 18.4 %
:RPS:PDB   99->260 3d3oA PDBj 2e-15 11.5 %
:RPS:SCOP  15->68 1oyiA  a.4.5.19 * 1e-07 20.4 %
:RPS:SCOP  97->260 1mkmA2  d.110.2.2 * 4e-18 13.8 %
:HMM:SCOP  11->86 1mkmA1 a.4.5.33 * 1.5e-12 45.3 %
:HMM:SCOP  76->260 1tf1A_ d.110.2.2 * 2.1e-24 30.0 %
:RPS:PFM   13->63 PF09339 * HTH_IclR 3e-05 46.0 %
:RPS:PFM   133->256 PF01614 * IclR 6e-08 30.0 %
:HMM:PFM   14->64 PF09339 * HTH_IclR 1.5e-15 48.0 50/52  
:HMM:PFM   131->257 PF01614 * IclR 5.5e-10 23.6 123/129  
:BLT:SWISS 22->56 RES2_CLOPE 2e-04 42.9 %
:BLT:SWISS 32->256 KDGR_ECOLI 4e-09 22.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID BAF55330.1 GT:GENE BAF55330.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00498CH01 GT:ORG cglu2 GB:ACCESSION GIB00498CH01 GB:LOCATION complement(2557449..2558231) GB:FROM 2557449 GB:TO 2558231 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAF55330.1 LENGTH 260 SQ:AASEQ MEIVKDEVNRSHVLTRAATILETVASAGSEGIRLLDLAEDTGISRPTVHRILGDLRALGYVQQLENKRYILGVRLGLLGLAAPTPVQHASELQKIAQDLADQLGDTVYIAMQYFDSVYYLARAHGGFPVRMQTVEVGDVQPMSATYSGIAILSQLPRPQQERMLDNLSRTERSEWSEIGTEQHQTLMRKALTQFLEDDFLYGDDYVLPGLSGAAILVPEGTKNRLVALSVSAIHSRLPDSRRDDVIRFMRAAARKIQQVL GT:EXON 1|1-260:0| BL:SWS:NREP 2 BL:SWS:REP 22->56|RES2_CLOPE|2e-04|42.9|35/100| BL:SWS:REP 32->256|KDGR_ECOLI|4e-09|22.7|220/263| SEG 71->80|lgvrlgllgl| BL:PDB:NREP 1 BL:PDB:REP 34->232|2g7uC|3e-06|32.2|180/244| RP:PDB:NREP 2 RP:PDB:REP 20->70|1biaA|9e-07|18.4|49/292| RP:PDB:REP 99->260|3d3oA|2e-15|11.5|148/167| RP:PFM:NREP 2 RP:PFM:REP 13->63|PF09339|3e-05|46.0|50/52|HTH_IclR| RP:PFM:REP 133->256|PF01614|6e-08|30.0|120/127|IclR| HM:PFM:NREP 2 HM:PFM:REP 14->64|PF09339|1.5e-15|48.0|50/52|HTH_IclR| HM:PFM:REP 131->257|PF01614|5.5e-10|23.6|123/129|IclR| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF09339|IPR005471| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF09339|IPR005471| RP:SCP:NREP 2 RP:SCP:REP 15->68|1oyiA|1e-07|20.4|54/62|a.4.5.19| RP:SCP:REP 97->260|1mkmA2|4e-18|13.8|159/171|d.110.2.2| HM:SCP:REP 11->86|1mkmA1|1.5e-12|45.3|75/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 76->260|1tf1A_|2.1e-24|30.0|180/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 115 OP:NHOMOORG 81 OP:PATTERN ------------------------1------------------------------------------- ----------1---1----------2------1----145------1-----2121--------1-32111------------------------------------------------------------------1-----------------------------------------------------11----------------1---------1------------------------------------------------------------------------------------------------------------------------------------------------1----------------------211--1---------------1-1----1--11-----1--------21-----1--11--1------------------------------------------------1--133241111-1-----1132------1141321-------1--1-112111-----------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------1------------------------2----------1--1---111------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 256 STR:RPRED 98.5 SQ:SECSTR ####HHHHcccccccTTHHHHHHHTTcccccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEEEETTEEEEEEEEcccEEEEcTTcccHHHHHHHHHHHHccEEEEEEEETTEEEEEEEEccccccccHcccTTccccGGcHHHHHTTcHHHHHHHHHHHHHHHGGGTccccccccccTTccHHHHHHHHHHHHcEEEEEccccTTEEEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTcc DISOP:02AL 1-15| PSIPRED cccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEcccccEEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEEccccEEEEEEcccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccEEEccccccccEEEEEEEEcccccEEEEEEEEEEHHHccHHHHHHHHHHHHHHHHHHHHcc //