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Corynebacterium glutamicum R (cglu2)
Gene : BAF55597.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  124/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1
:337 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   240->335 1d5yA PDBj 8e-08 31.2 %
:RPS:PDB   91->188 2arcA PDBj 2e-05 14.3 %
:RPS:PDB   223->332 1bl0A PDBj 3e-17 21.7 %
:RPS:SCOP  226->328 1v4aA1  a.24.16.4 * 8e-14 13.1 %
:HMM:SCOP  277->329 1d5yA2 a.4.1.8 * 5.8e-11 42.0 %
:RPS:PFM   294->327 PF00165 * HTH_AraC 3e-05 47.1 %
:HMM:PFM   247->273 PF00165 * HTH_AraC 4.8e-05 40.7 27/42  
:HMM:PFM   288->328 PF00165 * HTH_AraC 2.6e-13 37.5 40/42  
:HMM:PFM   90->187 PF02311 * AraC_binding 0.00045 16.8 95/136  
:BLT:SWISS 23->329 FEAR_ECOLI 2e-16 26.6 %
:PROS 17->31|PS00678|WD_REPEATS_1

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID BAF55597.1 GT:GENE BAF55597.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00498CH01 GT:ORG cglu2 GB:ACCESSION GIB00498CH01 GB:LOCATION 2853175..2854188 GB:FROM 2853175 GB:TO 2854188 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAF55597.1 LENGTH 337 SQ:AASEQ MTAQPDHELPRHLRFSTSGILPDNRVQMWEGHNARALLPLDIRTIDDRPMQASETNLHLPSMRMASVFGTSQFVERSESFISENPTGVVAIFFATEGEAVFFHRGGHVALRPGQAIVYDADRPFLRGFNNRFRELVLTIPKQRYLEIVGSKGPELPAIFEFGATGTANEQALARLVQESLHRIESGEPKHIDSSGLLGKPWSDIEHEAQGLIRNVLGDATSSEEGLISAAQRFIDINISDSGLQASRIAAAVGISERQLSRIFSESGQTIGRYVLNTRLDFAKEALSTPERDKVSVSEIGKRFGFASPSHFSRTFRERFEMTPLQWRKESQRQTFQD GT:EXON 1|1-337:0| BL:SWS:NREP 1 BL:SWS:REP 23->329|FEAR_ECOLI|2e-16|26.6|282/301| PROS 17->31|PS00678|WD_REPEATS_1|PDOC00574| BL:PDB:NREP 1 BL:PDB:REP 240->335|1d5yA|8e-08|31.2|93/288| RP:PDB:NREP 2 RP:PDB:REP 91->188|2arcA|2e-05|14.3|98/161| RP:PDB:REP 223->332|1bl0A|3e-17|21.7|106/116| RP:PFM:NREP 1 RP:PFM:REP 294->327|PF00165|3e-05|47.1|34/40|HTH_AraC| HM:PFM:NREP 3 HM:PFM:REP 247->273|PF00165|4.8e-05|40.7|27/42|HTH_AraC| HM:PFM:REP 288->328|PF00165|2.6e-13|37.5|40/42|HTH_AraC| HM:PFM:REP 90->187|PF02311|0.00045|16.8|95/136|AraC_binding| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 1 RP:SCP:REP 226->328|1v4aA1|8e-14|13.1|99/151|a.24.16.4| HM:SCP:REP 277->329|1d5yA2|5.8e-11|42.0|50/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 250 OP:NHOMOORG 124 OP:PATTERN -------------------------------------------------------------------- -----1-1111-------------1-----------4274------------132------------12-----------------------------------1-------------------------------------------------------------------------------------------------------------------------------5------------------1----------------------------------------------------------------------------------------------1-----------------------------311------21253----1-2--------1--2--------6----4111-------22-1---22------------------1-----------------------------------12--1----7667773222233232222238441111-----132--11--211---1---------------1------------------------------1------------------------------------------------------------------------------11---1---11--111---1-1---111111111---------------------1----------------------------------2---2---------------11111-------222212-1--2-1-1-2-------------------1---------------------------------------------------------------------------1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 214 STR:RPRED 63.5 SQ:SECSTR ##########################################################################################EEEEEEEcEEEEETTEEEEEcTTcEEEEcTTccEEEcTTccEEEEEEEEEcccGGGGGGccccEEETTEEEEcccTTTHHHHHHHHHHHHHHHHcccc###############################cHHcHHHHHHHHHHHHTTTTccccccHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHTHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTccccEcT## DISOP:02AL 1-5,212-224,327-338| PSIPRED cccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEccccccEEEEEEEEcccEEEEEEEcccEEEEEcHHHHHcccccEEEEEEEEccEEEEEEccEEEEEcccEEEEEccccEEEEEEcccccEEEEEEcHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHccccc //