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Corynebacterium glutamicum R (cglu2)
Gene : BAF55841.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  376/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:242 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   32->227 3fmsA PDBj 3e-10 27.9 %
:RPS:PDB   1->223 3c7jA PDBj 6e-23 22.7 %
:RPS:SCOP  26->87 1e2xA1  a.4.5.6 * 2e-09 19.4 %
:RPS:SCOP  59->223 1e2xA2  a.78.1.1 * 1e-12 10.8 %
:HMM:SCOP  12->117 1v4rA1 a.4.5.6 * 3e-12 32.7 %
:RPS:PFM   26->79 PF00392 * GntR 5e-05 44.4 %
:RPS:PFM   92->220 PF07729 * FCD 3e-06 39.2 %
:HMM:PFM   92->220 PF07729 * FCD 3.5e-22 33.9 124/125  
:HMM:PFM   22->82 PF00392 * GntR 1.5e-15 37.7 61/64  
:BLT:SWISS 28->172 YDHC_BACSU 6e-14 33.1 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID BAF55841.1 GT:GENE BAF55841.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00498CH01 GT:ORG cglu2 GB:ACCESSION GIB00498CH01 GB:LOCATION 3135163..3135891 GB:FROM 3135163 GB:TO 3135891 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAF55841.1 LENGTH 242 SQ:AASEQ MSNENWPDHVDTQRFSRLTLKSSTEELLRNYLLDGDMKPGEIYSANALAKKLGTSNSPVREAMTSLVHRGLLELVPNRGFRVIELTEQDHREIYILRSIVEVQAVRELARRGITADQGSELHRLAAQTLTIITAKNPPDLTKYLEADDAFHGYLITLLDNRRLQDIVLNLRDQSRINGAYRRLPEQGLLIPSAQEHIELATAIVSQEPENAARVMLQHLEYARPKSLSPEIEPALHMDYPTA GT:EXON 1|1-242:0| BL:SWS:NREP 1 BL:SWS:REP 28->172|YDHC_BACSU|6e-14|33.1|142/224| BL:PDB:NREP 1 BL:PDB:REP 32->227|3fmsA|3e-10|27.9|179/206| RP:PDB:NREP 1 RP:PDB:REP 1->223|3c7jA|6e-23|22.7|211/232| RP:PFM:NREP 2 RP:PFM:REP 26->79|PF00392|5e-05|44.4|54/64|GntR| RP:PFM:REP 92->220|PF07729|3e-06|39.2|120/125|FCD| HM:PFM:NREP 2 HM:PFM:REP 92->220|PF07729|3.5e-22|33.9|124/125|FCD| HM:PFM:REP 22->82|PF00392|1.5e-15|37.7|61/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 26->87|1e2xA1|2e-09|19.4|62/73|a.4.5.6| RP:SCP:REP 59->223|1e2xA2|1e-12|10.8|139/149|a.78.1.1| HM:SCP:REP 12->117|1v4rA1|3e-12|32.7|98/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 919 OP:NHOMOORG 380 OP:PATTERN ------1--------1---------------------------------------------------- --1-41112231--211----1--29-----21111449C---1313-1111364--1----3-138362------------4------------------------------------------------------2221----1-----------------------1---------------111-1-3-2-----11-1---1--4-2211--1----2--------15------------------------------------------------------------------------------------------23111----------33------1-2---1312341211---1---2-1---12111-----12874--32--2-22122222216-23622844A4--B7755464464556--14322-35432--------211--1-1--------------------------------4--3DC494563531222144BA22221281A8DC812--15222294C-B6232----1-----------212--41--11--111--1111111-1-------2---------------------1-------2-111--122222211122222211221----1--------1252-111111111111-111121112111111111222223-1-212222222222222211111111---11111111111--------------2151---------------22122-11--111122212232424--11-------------111111111121-11-11----------------------------------------------------------11111--- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 227 STR:RPRED 93.8 SQ:SECSTR HHHHHHHHHHccccccGGGHHHHHHHHHHHHHHTccccTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEEEcccHHHHHHHHHHHHHHHHHHHHHHHGGGccHHHHHHHHHHHHHHHHHHGGGTHHcccHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHH############### DISOP:02AL 1-22,238-238,242-243| PSIPRED cccccccccccHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc //