[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_00344
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  86/199 : Viruses  0/175   --->[See Alignment]
c.1.8
:875 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   31->339 2uy3A PDBj 5e-42 39.1 %
:RPS:PDB   29->339 1cnvA PDBj 9e-35 25.8 %
:RPS:SCOP  29->339 1cnvA  c.1.8.5 * 1e-35 25.8 %
:HMM:SCOP  27->334 1cnvA_ c.1.8.5 * 4.7e-78 39.4 %
:RPS:PFM   101->278 PF00704 * Glyco_hydro_18 2e-04 33.1 %
:HMM:PFM   32->338 PF00704 * Glyco_hydro_18 9.8e-24 22.9 253/342  
:BLT:SWISS 1->347,428->863 CHI2_COCIM 0.0 98.3 %
:PROS 169->177|PS01095|CHITINASE_18
:TM
:REPEAT 3|428->456|493->523|582->612
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_00344 GT:GENE CIRG_00344 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 875 SQ:AASEQ MGLSGLSLIISFIAVSSLFIQSLALNPYAKSNLAVYWGQGAGQNRLSYFCEKTSFDIIVVGFINVFPDQGPAGWPGSNFGNQCADSYYYTKNGTKTKLLDGCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYNNPSCSAKRWVTNPKSVTYTVDDWVKYIRKSGNPLAKLFIGLPASKSAAAKEDYLTPGEATKIVSTYMAKYPSTFGGMMVWEATASENNKLGGLPYADIMKEVLLRCDPDPPTSTVTSTISASTSTQTSSQSTTMETKTLSASTTPSSPSTVSPSSTMQTTSTGSTSTGTGTTSSQVTSSTTISTRSASTETVTTRSQEPPSTTISTRSASTETVTTRSQEPPSSTISTRSASTETSTSSQDSPSTTISTKSAPTGTVTTRSQDLPSTTISTRSPETETETVTTKSQDSPSITLSTRSSSAETVSTRSQHSSSTTISTKSAPTETGTTSEHSTSMPVSTRSASTETVITRSQNSDSQSMTVSTRSPSTESITTRSQGSPSETFSTKSVPVDTISTELPSQTHSTTDSTPVSSSPTIPSGSTTIITGTASDPVSAPTTTVPPNPTLTLAPSSSTTEDRTTITTIITTSYVTVCPTGFTTVTITYTTTYCPETASLTPTQAPIPGAPAPPPDGWTTIVTVCPQCAPTPTTVTLTVPTRSAFLPAPTETRPVVTVVPVPENPIKNVKPSESGDFVTVTTVAPATVTKTLEYNNPVDSDVNVQPTGGSSPVEFEGGAMTVRSMDVVAKALITAGAAVLGLFLGL BL:SWS:NREP 1 BL:SWS:REP 1->347,428->863|CHI2_COCIM|0.0|98.3|781/895| PROS 169->177|PS01095|CHITINASE_18|PDOC00839| TM:NTM 3 TM:REGION 3->25| TM:REGION 49->71| TM:REGION 854->875| NREPEAT 1 REPEAT 3|428->456|493->523|582->612| SEG 348->427|tstvtstisaststqtssqsttmetktlsasttpsspstvspsstmqttstgststgtgttssqvtssttistrsastet| SEG 459->485|sstistrsastetstssqdspsttist| SEG 524->535|spsitlstrsss| SEG 558->569|tetgttsehsts| SEG 638->664|sttdstpvsssptipsgsttiitgtas| SEG 666->702|pvsaptttvppnptltlapsssttedrttittiitts| SEG 709->726|tgfttvtitytttycpet| SEG 731->744|ptqapipgapappp| SEG 759->770|ptpttvtltvpt| SEG 776->791|paptetrpvvtvvpvp| SEG 807->820|vtvttvapatvtkt| SEG 864->874|agaavlglflg| BL:PDB:NREP 1 BL:PDB:REP 31->339|2uy3A|5e-42|39.1|279/285| RP:PDB:NREP 1 RP:PDB:REP 29->339|1cnvA|9e-35|25.8|279/283| RP:PFM:NREP 1 RP:PFM:REP 101->278|PF00704|2e-04|33.1|154/309|Glyco_hydro_18| HM:PFM:NREP 1 HM:PFM:REP 32->338|PF00704|9.8e-24|22.9|253/342|Glyco_hydro_18| GO:PFM:NREP 2 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF00704|IPR001223| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00704|IPR001223| RP:SCP:NREP 1 RP:SCP:REP 29->339|1cnvA|1e-35|25.8|279/283|c.1.8.5| HM:SCP:REP 27->334|1cnvA_|4.7e-78|39.4|282/0|c.1.8.5|1/1|(Trans)glycosidases| OP:NHOMO 257 OP:NHOMOORG 86 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------232212554323311111-2222342333111436911-123221222212-11-3111-31111112335311-3442121-------536-------------------------------------------------------------------2------------MPE118------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 319 STR:RPRED 36.5 SQ:SECSTR ###########################HGGcEEEEEEccGTGGccHHHHHHTccccEEEEEEEcEEcTTcEEcccccccTTTccTTTTcTTEEccEEcTccGGGGHHHHHHHHHTTcEEEEEEEccccccEEccccHHHHHHHHHHHHHHcccHccccccccTTccccccEEEEEccccccTTHHHHHHHHHHHHHHHTTcccEEEEccccccccTTTHHHHTTTcccEEEEEccccTTTccccccccTTccHHHHHHHHHHHHHcccccccEEEEEEccGGGcTTcccccHHHHHHHTGGGcTTHHHHEEEEEEEcHHHHHHHHHHcHTHHHHHHHHcTHHHHHH################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################# PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHcccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEEcccccccccEEccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHcccccccEEEEEccccccccccccEEcccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccc //