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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_00439
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  17/68 : Bacteria  0/915 : Eukaryota  60/199 : Viruses  0/175   --->[See Alignment]
a.5.6
:129 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   46->118 2cruA PDBj 4e-09 38.4 %
:RPS:PDB   46->118 2cruA PDBj 4e-16 38.4 %
:RPS:SCOP  46->116 2cruA1  a.5.6.1 * 5e-17 38.0 %
:HMM:SCOP  9->116 2cruA1 a.5.6.1 * 1.1e-31 49.5 %
:RPS:PFM   46->115 PF01984 * dsDNA_bind 5e-09 57.1 %
:HMM:PFM   9->115 PF01984 * dsDNA_bind 6e-39 56.6 106/107  
:BLT:SWISS 46->111 Y1886_METB6 6e-13 48.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_00439 GT:GENE CIRG_00439 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 129 SQ:AASEQ MADSELEEIRRARLAQLQQQGGAGGAGAPNPEEQRRQQEADARQAILSQILLPEAADRLNRIRMVKETRATDVENRLIMLARTGQLRAKVTEDQLKDLLNAVAENKEEEKIIISRRKGGWDDDDDLLDL BL:SWS:NREP 1 BL:SWS:REP 46->111|Y1886_METB6|6e-13|48.5|66/112| SEG 10->28|rrarlaqlqqqggaggaga| SEG 32->45|eeqrrqqeadarqa| SEG 121->128|dddddlld| BL:PDB:NREP 1 BL:PDB:REP 46->118|2cruA|4e-09|38.4|73/118| RP:PDB:NREP 1 RP:PDB:REP 46->118|2cruA|4e-16|38.4|73/118| RP:PFM:NREP 1 RP:PFM:REP 46->115|PF01984|5e-09|57.1|70/107|dsDNA_bind| HM:PFM:NREP 1 HM:PFM:REP 9->115|PF01984|6e-39|56.6|106/107|dsDNA_bind| GO:PFM:NREP 1 GO:PFM GO:0003677|"GO:DNA binding"|PF01984|IPR002836| RP:SCP:NREP 1 RP:SCP:REP 46->116|2cruA1|5e-17|38.0|71/105|a.5.6.1| HM:SCP:REP 9->116|2cruA1|1.1e-31|49.5|105/0|a.5.6.1|1/1|Double-stranded DNA-binding domain| OP:NHOMO 79 OP:NHOMOORG 77 OP:PATTERN ------1111111111---------------------------11111--------------11---- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------11111111111-1111111111111111111111111111111111111-----------------------1-----11-------------------------------------------------------------------1---------------------11----1-1--12-11 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 73 STR:RPRED 56.6 SQ:SECSTR #############################################HHHHHccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHTcccccccHHHHHHHHHHHTTcccccccccccccc########### DISOP:02AL 129-130| PSIPRED cccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEEHHHHccccHHHHHcc //