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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_00702
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  162/199 : Viruses  0/175   --->[See Alignment]
b.40.4
:146 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->146 3i4mH PDBj 4e-21 39.4 %
:RPS:PDB   4->146 2e2iH PDBj 4e-15 38.9 %
:RPS:SCOP  4->146 1i3qH  b.40.4.8 * 2e-16 38.9 %
:HMM:SCOP  3->146 1twfH_ b.40.4.8 * 1.3e-46 53.6 %
:RPS:PFM   8->146 PF03870 * RNA_pol_Rpb8 1e-28 51.1 %
:HMM:PFM   8->146 PF03870 * RNA_pol_Rpb8 3.2e-37 44.4 133/138  
:BLT:SWISS 6->146 RPAB3_YEAST 6e-21 37.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_00702 GT:GENE CIRG_00702 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 146 SQ:AASEQ MSDPILFEDTFTITSINAQKYDRVSRISCTSTDQLTTFTLDVNSELYRCAPGESLSLALASTLALDGKDEGAGGRAVWRDVGMGETTLANDYDYVCYGKVYRFEDSSTAGNMAVFVSFGGLLLYLDGPYKKLNPLRIDYVYLLIKK BL:SWS:NREP 1 BL:SWS:REP 6->146|RPAB3_YEAST|6e-21|37.9|140/146| SEG 54->65|slslalastlal| BL:PDB:NREP 1 BL:PDB:REP 6->146|3i4mH|4e-21|39.4|132/137| RP:PDB:NREP 1 RP:PDB:REP 4->146|2e2iH|4e-15|38.9|131/134| RP:PFM:NREP 1 RP:PFM:REP 8->146|PF03870|1e-28|51.1|133/136|RNA_pol_Rpb8| HM:PFM:NREP 1 HM:PFM:REP 8->146|PF03870|3.2e-37|44.4|133/138|RNA_pol_Rpb8| GO:PFM:NREP 1 GO:PFM GO:0006350|"GO:transcription"|PF03870|IPR005570| RP:SCP:NREP 1 RP:SCP:REP 4->146|1i3qH|2e-16|38.9|131/133|b.40.4.8| HM:SCP:REP 3->146|1twfH_|1.3e-46|53.6|140/0|b.40.4.8|1/1|Nucleic acid-binding proteins| OP:NHOMO 173 OP:NHOMOORG 162 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1-1111--311-1111111111111-1111111111111111111111111111111111--1111111111111111-111111111-11111111111111112-1--1111111-1-1-1-11-1-321--11--1-1111-----11--1-1111-1111-1-111-1111111-3111111111122111111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 145 STR:RPRED 99.3 SQ:SECSTR #ccccccEEEEEEEEEEccccccEEEEEEEEccTTcEEEEEEETTTccccTTcEEEEEcccccccccccccccccccccccccccccccccccEEEEcEEEEEEEccTTTcEEEEEEETTEEEEEEccccTTTcccccccEEEEEc DISOP:02AL 146-147| PSIPRED ccccEEEEEEEEEEEccccEEEEEEEEEEEEccccEEEEEEEccEEEEcccccEEEEEEEEccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEccHHEEHHcccHHHccccEEEEEEEEEEc //