[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_00709
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  107/199 : Viruses  0/175   --->[See Alignment]
b.69.4
:459 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   20->59 1tbgA PDBj 2e-04 40.0 %
:RPS:PDB   15->391 3ei3A PDBj 1e-13 11.0 %
:RPS:SCOP  19->370 1nr0A2  b.69.4.1 * 1e-10 18.3 %
:HMM:SCOP  10->457 1gotB_ b.69.4.1 * 9.4e-29 26.3 %
:HMM:PFM   16->52 PF00400 * WD40 2.4e-06 40.5 37/39  
:HMM:PFM   281->314 PF00400 * WD40 7.8e-05 21.2 33/39  
:HMM:PFM   433->457 PF00400 * WD40 3e-05 44.4 18/39  
:HMM:PFM   71->126 PF05282 * AAR2 0.00076 23.2 56/360  
:BLT:SWISS 15->391 YLP2_SCHPO 3e-36 38.7 %
:PROS 39->53|PS00678|WD_REPEATS_1

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_00709 GT:GENE CIRG_00709 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 459 SQ:AASEQ MASSDLQSTMHPPATPAYVLRGHAAPVHALHFYNQNTRLVSGDADGWAIVWNMTTKRPVATWKAHEGSILNVKGVKFAADGGHLCDANEQAASDSSEMRVFTHGRDNALRVWRLNTKEEELLDKRLPIEENSTPKNMKEPWLIYSITVNALNFCGFSICFKPSLSYEPNLEGSCLEQVSSVDALPGSCMPKVSSEMFIAVPNAMNTGGIDIFHLPSQKRICIIYADKSVNTGMVMALEIFFSSAGDLYVVSGYEDGQAMVHMQRGPIVIEDMDDASTWNWERIYLHRAHQQPILSLDVSPMHKSHFFTSSADAMIVRHPLPLRSDDVKSGDQVPLRIVNTKHAGQQGLKIRSDEKILVTSGWDGRARVYSCKSIKELAVLKWHREGCYAIALAEIEADEPTTHLPTEPAEEKPESSTLIQRNQPRSLIAINQQRSRKAQLTHWIAVGSKDGKISLWDIY BL:SWS:NREP 1 BL:SWS:REP 15->391|YLP2_SCHPO|3e-36|38.7|313/368| PROS 39->53|PS00678|WD_REPEATS_1|PDOC00574| BL:PDB:NREP 1 BL:PDB:REP 20->59|1tbgA|2e-04|40.0|40/340| RP:PDB:NREP 1 RP:PDB:REP 15->391|3ei3A|1e-13|11.0|346/1105| HM:PFM:NREP 4 HM:PFM:REP 16->52|PF00400|2.4e-06|40.5|37/39|WD40| HM:PFM:REP 281->314|PF00400|7.8e-05|21.2|33/39|WD40| HM:PFM:REP 433->457|PF00400|3e-05|44.4|18/39|WD40| HM:PFM:REP 71->126|PF05282|0.00076|23.2|56/360|AAR2| RP:SCP:NREP 1 RP:SCP:REP 19->370|1nr0A2|1e-10|18.3|290/299|b.69.4.1| HM:SCP:REP 10->457|1gotB_|9.4e-29|26.3|278/0|b.69.4.1|1/1|WD40 repeat-like| OP:NHOMO 128 OP:NHOMOORG 107 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------11111111111111-111111111-111111111111111111111111111--------11------------11-1211111111-1---11-1--22-111------1142-313511111----11112-1---1--4-11-1--------1----------------11121111---1--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 458 STR:RPRED 99.8 SQ:SECSTR HccTTEEccEEcTTEEEEEEccccEEEEEccTTcccEEEEEETTTTEEEEEETTTccEEEEEEccccccEEEEEEEEETTEEEEEccccEEEccccTTEEEEEETTcEEEEEEEcTTTTccccEEEEEEEEccccccEEEEEEccccEEEEEEccccEEEEEccccEEEEEcccccEEEEEcccccTTEEEEEccccEEEEEEcccccEEEEEEEcccEEEEEEEEEccccHHHHccEEEEccccccccccEEEEEEEEEEETTTccEEEcTTccEEEEEEEEccTTEEEEEEEEEccTTccccEEEEEEEEccTTccccccEEEEEEEEETTEEEEEEEEEEcccGEEEEEEETTEEEEEETTEEEEEEEcTTccEEEEEEEcccccEEEEEcHHHHHTccTEEEEEETTEcHHHHTTcccTccEEEEEEEcTTccEEEEEEEccTTcccEEEEEET# PSIPRED ccccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEEEEcccccEEEEccccccccccccEEEEEccccEEEEEEccccccccccccEEEcccccccccEEccccEEEEEccEEEEEEEEEcccccEEEEEccccccEEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccccccccEEEEEEEcccccEEEEEEccccEEEEEEccccEEEEccccccccccEEEEEEccccccEEEEEEccccccEEEEEccccEEEEEccccccccccccccEEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEEcccccccEEEEEEccccEEEEEcc //