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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_00780
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  106/199 : Viruses  0/175   --->[See Alignment]
g.41.3
:121 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   37->118 3gtmS PDBj 2e-06 31.7 %
:RPS:PDB   9->120 3cqzI PDBj 8e-05 23.8 %
:RPS:SCOP  70->119 1qypA  g.41.3.1 * 9e-10 32.0 %
:HMM:SCOP  58->121 1i50I2 g.41.3.1 * 1.3e-11 32.8 %
:RPS:PFM   83->117 PF01096 * TFIIS_C 1e-06 51.4 %
:HMM:PFM   81->117 PF01096 * TFIIS_C 3.4e-17 51.4 37/39  
:HMM:PFM   7->34 PF02150 * RNA_POL_M_15KD 1.1e-08 40.7 27/35  
:BLT:SWISS 1->121 RPA12_YEAST 3e-28 52.1 %
:PROS 9->33|PS01030|RNA_POL_M_15KD

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_00780 GT:GENE CIRG_00780 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 121 SQ:AASEQ MSAIGSLIFCVDCGNLLNESTGDENTILVCDICGTKNRDIAPKTIISESKPEAFPSALRSKRSAVRTLTAEDKKKDAVIAHTCDQCGRPEMTFYTLQLRSADEGTTVFYSCECGYKFSTNN BL:SWS:NREP 1 BL:SWS:REP 1->121|RPA12_YEAST|3e-28|52.1|117/125| PROS 9->33|PS01030|RNA_POL_M_15KD|PDOC00790| BL:PDB:NREP 1 BL:PDB:REP 37->118|3gtmS|2e-06|31.7|82/163| RP:PDB:NREP 1 RP:PDB:REP 9->120|3cqzI|8e-05|23.8|105/121| RP:PFM:NREP 1 RP:PFM:REP 83->117|PF01096|1e-06|51.4|35/39|TFIIS_C| HM:PFM:NREP 2 HM:PFM:REP 81->117|PF01096|3.4e-17|51.4|37/39|TFIIS_C| HM:PFM:REP 7->34|PF02150|1.1e-08|40.7|27/35|RNA_POL_M_15KD| GO:PFM:NREP 4 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01096|IPR001222| GO:PFM GO:0008270|"GO:zinc ion binding"|PF01096|IPR001222| GO:PFM GO:0030528|"GO:transcription regulator activity"|PF01096|IPR001222| GO:PFM GO:0045449|"GO:regulation of transcription"|PF01096|IPR001222| RP:SCP:NREP 1 RP:SCP:REP 70->119|1qypA|9e-10|32.0|50/57|g.41.3.1| HM:SCP:REP 58->121|1i50I2|1.3e-11|32.8|64/0|g.41.3.1|1/1|Zinc beta-ribbon| OP:NHOMO 115 OP:NHOMOORG 106 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----11------1111-1--1-1-12-1111112211111-111111112--1-1111111111111111111111111111111111-121-1111111-111121121---------------1-----------------------------------------11-----1-11--1111-11--2---111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 112 STR:RPRED 92.6 SQ:SECSTR ########ccTTTcccEEEEEETTTTEEEEcccccEEEccccccccccccccTTTTTTccTTGGHHHHHHHGcTTccEEccccTTTccccEEEEEcccccTTccccEEEEETTccEEEcc# DISOP:02AL 120-122| PSIPRED cccEEcccccccccccccccccccccEEEEcccccccccccccEEEEEEHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccEEEEEEEEEcccccccEEEEEEEcccEEEccc //