[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_00801
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  98/199 : Viruses  0/175   --->[See Alignment]
d.58.7
:838 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   196->274 1x4gA PDBj 3e-05 34.2 %
:BLT:PDB   461->566 3sxlA PDBj 5e-08 37.2 %
:RPS:PDB   196->337 1cvjF PDBj 4e-09 19.1 %
:RPS:PDB   420->570 1b7fA PDBj 2e-13 24.5 %
:RPS:SCOP  194->274 1sjqA  d.58.7.1 * 7e-10 22.0 %
:RPS:SCOP  285->359 1wwhA1  d.58.7.1 * 2e-06 12.0 %
:RPS:SCOP  420->589 1u1kA  d.58.7.1 * 3e-17 15.3 %
:HMM:SCOP  194->359 1u1qA_ d.58.7.1 * 1.6e-23 35.2 %
:HMM:SCOP  419->574 1u1qA_ d.58.7.1 * 1.6e-23 30.9 %
:RPS:PFM   288->341 PF00076 * RRM_1 2e-04 30.0 %
:RPS:PFM   513->570 PF00076 * RRM_1 6e-08 43.1 %
:HMM:PFM   197->244 PF00076 * RRM_1 1.9e-07 37.5 48/70  
:HMM:PFM   288->342 PF00076 * RRM_1 3.6e-15 50.9 55/70  
:HMM:PFM   422->487 PF00076 * RRM_1 6.7e-06 32.8 64/70  
:HMM:PFM   513->570 PF00076 * RRM_1 2.5e-14 37.9 58/70  
:HMM:PFM   77->118 PF10378 * RRM 1.4e-11 47.6 42/56  
:BLT:SWISS 172->589 NRD1_SCHPO e-118 59.7 %
:REPEAT 3|173->242|264->334|489->559
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_00801 GT:GENE CIRG_00801 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 838 SQ:AASEQ MQTSDVAHAPNSIVGNRLMQPVSKLPNPGPDSTGFSHGAYAGNLSFADRNSRRANIPAINTSTTGQTSGDITSANNAFDMNFAPLLPSQLLLGSPFQTGTPSFASPQFQTFQGFPQANGNSHGQTSQNQLNSPTQAQHNPLSPQLYQNLVSPDGMGPSPLLGGPQSPVGGFPGFANAFGTANPSLQPGILSGTSRTVYLGNLPAETTAEEILGHVRSGQIESVRLLPDKNCAFISFLDSSSATHFHSDAILKKLSIKGNDIKIGWGKPSQVPTSVALAVQQSGASRNVYLGNLSEDVTEEELREELGKFGPIDTVKIVREKSIGFVHFLSISNAIKAVNQLPQEPNWQPPKRVYYGKDRCAYVSKTQQQNAAQYLGIAPGYAHMLNSADRDLISNALAQQSVAAAAVATAAGGVNNLGNRTVYLGNIHPETTIEEICNVVRGGLLHHIRYIPDKHICFVTFIDPTSAASFYALSNLQGLMIHNRRLKIGWGKHSGALPPAIALAVSGGASRNVYIGNLDESWTEDRLRQDFSAYGEIELVNALREKSCAFVNFTNIANAIKAIEGMRGREEYKRFKINFGKDRCGNPPRQLNNGQPARTDGNNSLLNGGLQSSLNQGGQQSSPTGPALSPAPGSTGSQGANGQQTRHPLQAIPTPSSILNTGANNPLTMYLNHVSQQQAQEQENRLNGSMGFGSLQQQQQQPSHQQQGFAHQQAGLYNGTGASDNSSSVESSLHQQKPSNHGLLNGSGATSSGHHASSGATLSVPRAQHSRAVSLPSFSQEPFGQSHNLSSRSGMAHQPQGSFSGFGGLGGLNHNGFGLSISNENSLPGWAEEEIRAK BL:SWS:NREP 1 BL:SWS:REP 172->589|NRD1_SCHPO|e-118|59.7|392/529| NREPEAT 1 REPEAT 3|173->242|264->334|489->559| SEG 84->95|pllpsqlllgsp| SEG 151->170|spdgmgpspllggpqspvgg| SEG 293->306|lsedvteeelreel| SEG 394->419|snalaqqsvaaaavataaggvnnlgn| SEG 601->622|gnnsllngglqsslnqggqqss| SEG 691->716|gfgslqqqqqqpshqqqgfahqqagl| SEG 746->761|gsgatssghhassgat| SEG 801->820|gsfsgfgglgglnhngfgls| BL:PDB:NREP 2 BL:PDB:REP 196->274|1x4gA|3e-05|34.2|76/109| BL:PDB:REP 461->566|3sxlA|5e-08|37.2|94/154| RP:PDB:NREP 2 RP:PDB:REP 196->337|1cvjF|4e-09|19.1|119/131| RP:PDB:REP 420->570|1b7fA|2e-13|24.5|139/167| RP:PFM:NREP 2 RP:PFM:REP 288->341|PF00076|2e-04|30.0|54/71|RRM_1| RP:PFM:REP 513->570|PF00076|6e-08|43.1|58/71|RRM_1| HM:PFM:NREP 5 HM:PFM:REP 197->244|PF00076|1.9e-07|37.5|48/70|RRM_1| HM:PFM:REP 288->342|PF00076|3.6e-15|50.9|55/70|RRM_1| HM:PFM:REP 422->487|PF00076|6.7e-06|32.8|64/70|RRM_1| HM:PFM:REP 513->570|PF00076|2.5e-14|37.9|58/70|RRM_1| HM:PFM:REP 77->118|PF10378|1.4e-11|47.6|42/56|RRM| GO:PFM:NREP 2 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00076|IPR000504| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00076|IPR000504| RP:SCP:NREP 3 RP:SCP:REP 194->274|1sjqA|7e-10|22.0|81/88|d.58.7.1| RP:SCP:REP 285->359|1wwhA1|2e-06|12.0|74/81|d.58.7.1| RP:SCP:REP 420->589|1u1kA|3e-17|15.3|163/183|d.58.7.1| HM:SCP:REP 194->359|1u1qA_|1.6e-23|35.2|159/0|d.58.7.1|1/2|RNA-binding domain, RBD| HM:SCP:REP 419->574|1u1qA_|1.6e-23|30.9|149/0|d.58.7.1|2/2|RNA-binding domain, RBD| OP:NHOMO 192 OP:NHOMOORG 98 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----21------22222112222221222222222213131222222222212112222222122222-22222222-2222222214-12122221111222566------------------------------------------------------------------------------1-12-21-------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 345 STR:RPRED 41.2 SQ:SECSTR ##################################################################################################################################################################################cccccccccccccccccEEEEEcccTTccHHHHHHHHHTccEEEEEccEETTTTEccEEEEEEccHHHHHHHHHHHTETTEEcEEEEccccccTTHTcTTTcEEEEEcccTTccHHHHHHHHTccccEEEEEEEEcTTTccEEEEEEEEEccHHHHHHHHHHHc#############################################################################cEEEEEcccTTccHHHHHHHHHTccEEEEEccEETcEEEEEEccHHHHHHcHHHHHHTTcEETTEEcEEEEccccccTTTccccccTTTTTcEEEEEcccTTccHHHHHHHHTccccEEcTTTccEEEEEEEEEccHHHHHHHHHHHTTccccEEcEEEEcccccccccccccccccTTcc############################################################################################################################################################################################################################################## PSIPRED ccccccccccHHHHHcccccccccccccccccccccHHHHHccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHcccccEEEEEEEEcccEEEEEEccHHHHHHHHHHHHccccEEccEEEEEEEcccccccccccccccccccccEEEEccccccccHHHHHHHHHHcccEEEEEEEccccEEEEEEccHHHHHHHHHHHccEEccccEEEEEEcccccccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccccEEEEccccccccHHHHHHHHccccEEEEEEcccccEEEEEEccHHHHHHHHHHHHHccEEEccEEEEEEccccccccccHHHcccccccccEEEEccccccccHHHHHHHHHHcccEEEEEEEccccEEEEEEccHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccHHHHHccc //