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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_01223
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  184/199 : Viruses  0/175   --->[See Alignment]
d.58.7
:252 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   115->187 2dgoA PDBj 3e-13 39.7 %
:RPS:PDB   117->193 1cvjF PDBj 5e-17 32.5 %
:RPS:SCOP  118->192 1cvjA1  d.58.7.1 * 1e-22 33.3 %
:HMM:SCOP  110->226 1h2tZ_ d.58.7.1 * 2.6e-23 38.6 %
:RPS:PFM   118->188 PF00076 * RRM_1 4e-16 45.1 %
:HMM:PFM   118->187 PF00076 * RRM_1 7.6e-21 37.7 69/70  
:BLT:SWISS 95->197 RBM42_XENLA 1e-33 58.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_01225 GT:GENE CIRG_01223 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 252 SQ:AASEQ MDPETEAQIAQWQSAYMSKDESNQIAASNGKAGVGRRDDASSATGANTGPLGNIQRLQDGSTISTPPSVAQTTSTTPIPGQPNAPNQSGPGKTVMRSGGGQTWTDSTLLEWDPAHFRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAAREMQGKYIGSHPVLLRRAMTEIRPVVVGKGGAKGHKKGGNTSGSGAGGGKASKAGGKAPDSGIQKKQAKTKGGLRVLG BL:SWS:NREP 1 BL:SWS:REP 95->197|RBM42_XENLA|1e-33|58.3|103/392| SEG 199->236|vvvgkggakghkkggntsgsgagggkaskaggkapdsg| BL:PDB:NREP 1 BL:PDB:REP 115->187|2dgoA|3e-13|39.7|73/115| RP:PDB:NREP 1 RP:PDB:REP 117->193|1cvjF|5e-17|32.5|77/131| RP:PFM:NREP 1 RP:PFM:REP 118->188|PF00076|4e-16|45.1|71/71|RRM_1| HM:PFM:NREP 1 HM:PFM:REP 118->187|PF00076|7.6e-21|37.7|69/70|RRM_1| GO:PFM:NREP 1 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00076|IPR000504| RP:SCP:NREP 1 RP:SCP:REP 118->192|1cvjA1|1e-22|33.3|75/80|d.58.7.1| HM:SCP:REP 110->226|1h2tZ_|2.6e-23|38.6|114/0|d.58.7.1|1/1|RNA-binding domain, RBD| OP:NHOMO 609 OP:NHOMOORG 185 OP:PATTERN -------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1111221-1---22333333333333221322322233132233332233333323333333222--11311222-1--1-3332221-23332432222232493-1124E955522131221B6181BK5-5372221412422322332-9332342342222283226722-221I11113ADJG3H92121121 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 128 STR:RPRED 50.8 SQ:SECSTR ######################################################################HHHHHHHcccccccccGGGTTEEccccccccccEccEEEETcccccEEEEEcccTTccHHHHHHHHGGGccEEEEEEEEcTTTccEEEEEEEEEccHHHHHHHHTTccccEETTEEcEEEEccccccH###################################################### PSIPRED ccHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccHHHHcccccccccHHHHHHHcccccccccHHHHHHccccHHccccccccccccccccccccccEEEEccccccccHHHHHHHHHccccEEEEEEEEcccccccccEEEEEEccHHHHHHHHHHccccEEccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcc //