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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_01236
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  178/199 : Viruses  0/175   --->[See Alignment]
g.37.1
:516 amino acids
:SECSTR
:PSIPRED
:RPS:PDB   369->426 3ejoB PDBj 7e-05 13.8 %
:RPS:SCOP  17->66 2vrdA1  g.37.1.4 * 5e-08 18.0 %
:HMM:SCOP  15->44 3znfA_ g.37.1.1 * 4.7e-05 30.0 %
:HMM:SCOP  84->133 1zr9A1 g.37.1.1 * 0.00014 26.0 %
:HMM:SCOP  184->309 1wirA_ g.37.1.5 * 9.1e-08 25.0 %
:HMM:PFM   17->42 PF12171 * zf-C2H2_jaz 9.5e-06 30.8 26/27  
:HMM:PFM   84->107 PF12171 * zf-C2H2_jaz 1.6e-07 50.0 24/27  
:HMM:PFM   249->282 PF09630 * DUF2024 3.2e-05 21.2 33/81  
:BLT:SWISS 17->299,387->516 YJVF_SCHPO 3e-47 35.5 %
:PROS 19->41|PS00028|ZINC_FINGER_C2H2_1
:PROS 84->106|PS00028|ZINC_FINGER_C2H2_1
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_01238 GT:GENE CIRG_01236 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 516 SQ:AASEQ MPSSTADNLGAPTTHPFTCNTCQVAFRSSDAQRTHMRSDWHRYNLKRRVASLPPLSSETFAEKVLSVQASNSAAAARATFEKTCTACQKTYYSENAFINHMGSQKHRLKEALLRKNGGHLDDSASVVSGAFSMGEPINVPPNVVSPETIVEEEFSAIVDGMKDTSVDAKDPVAGRPHRPSQSRSSDSRRPSVSTKMEIDAVTVSRCLFCNYDSSDINENVSHMHKSHGMFIPEQDYLVDLEGLIKYLQAKVMQNNECLYCHKLKTTTPGIQTHMRDKGHCMIAFESEEEMIEIGQFYDFTSTYSDDEEEEYSDRRRDGAVDGSAEEDDGWETDTSASSLDSAELGAVPIDDYSHQYSKLSKHKHHSHEPRSHRNLDGFHSHAHEHTRAVFYSDSELHLPSGRTAGHRALAKYYRQNLRDYPTPEERFSRQQAIEAAPSGETQEGETEAAFQNKNRALISRANGGIGMLGATASQKQEVRAAEVRDRKREQRSERAFQWAVSKRANHQKHFRDHLLQ BL:SWS:NREP 1 BL:SWS:REP 17->299,387->516|YJVF_SCHPO|3e-47|35.5|384/463| PROS 19->41|PS00028|ZINC_FINGER_C2H2_1|PDOC00028| PROS 84->106|PS00028|ZINC_FINGER_C2H2_1|PDOC00028| SEG 69->78|asnsaaaara| SEG 175->193|rphrpsqsrssdsrrpsvs| SEG 300->317|tstysddeeeeysdrrrd| SEG 353->367|shqysklskhkhhsh| RP:PDB:NREP 1 RP:PDB:REP 369->426|3ejoB|7e-05|13.8|58/291| HM:PFM:NREP 3 HM:PFM:REP 17->42|PF12171|9.5e-06|30.8|26/27|zf-C2H2_jaz| HM:PFM:REP 84->107|PF12171|1.6e-07|50.0|24/27|zf-C2H2_jaz| HM:PFM:REP 249->282|PF09630|3.2e-05|21.2|33/81|DUF2024| RP:SCP:NREP 1 RP:SCP:REP 17->66|2vrdA1|5e-08|18.0|50/61|g.37.1.4| HM:SCP:REP 15->44|3znfA_|4.7e-05|30.0|30/0|g.37.1.1|1/3|C2H2 and C2HC zinc fingers| HM:SCP:REP 84->133|1zr9A1|0.00014|26.0|50/0|g.37.1.1|2/3|C2H2 and C2HC zinc fingers| HM:SCP:REP 184->309|1wirA_|9.1e-08|25.0|108/0|g.37.1.5|2/2|C2H2 and C2HC zinc fingers| OP:NHOMO 252 OP:NHOMOORG 178 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1-11111-1--11112223111111111111112221111111111111233233322211112222212222222223222222211-11121111111111322-22-22111111-1111113111121-1-11111111112111-11111311113411111111--1112--13-----2112131111111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 58 STR:RPRED 11.2 SQ:SECSTR ################################################################################################################################################################################################################################################################################################################################################################################HHHHHHHHHHGGTEEcccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHTTccccHHHH########################################################################################## PSIPRED cccccccccccccccEEEEEccccEEccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHcccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHccHHHHccccccccccccccccccccHHHHHHHHHHHcccccccHHHcccHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccHHHccHHHccccccccccccccccccccHHHccccccccccccHHHHHHcccccccccccccccHHHHcccccccccccccccccccccEEEccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcc //