[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_01302
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  171/199 : Viruses  0/175   --->[See Alignment]
a.118.9a.7.8b.121.4d.204.1g.50.1
:677 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->179 1dvpA PDBj 2e-32 40.5 %
:BLT:PDB   214->281 1q0vA PDBj 2e-06 43.5 %
:RPS:PDB   1->92 3d9oA PDBj 2e-16 16.7 %
:RPS:PDB   111->153 2ayjA PDBj 5e-04 17.1 %
:RPS:PDB   126->180 1dvpA PDBj 2e-05 65.5 %
:RPS:PDB   407->596 2btvA PDBj 4e-07 6.6 %
:RPS:SCOP  1->112 1jplA  a.118.9.2 * 1e-23 22.0 %
:RPS:SCOP  119->179 1jocA1  g.50.1.1 * 2e-20 49.2 %
:RPS:SCOP  248->284 2ywqA1  d.204.1.1 * 4e-04 35.1 %
:RPS:SCOP  312->390 1wrdA1  a.7.8.1 * 2e-08 13.9 %
:RPS:SCOP  446->644 1f8v.1  b.121.4.4 * 5e-05 11.6 %
:HMM:SCOP  1->103 1elkA_ a.118.9.2 * 1.1e-27 45.1 %
:HMM:SCOP  119->185 1vfyA_ g.50.1.1 * 1.7e-22 47.8 %
:RPS:PFM   2->95 PF00790 * VHS 1e-21 52.7 %
:RPS:PFM   120->179 PF01363 * FYVE 3e-16 60.0 %
:HMM:PFM   1->97 PF00790 * VHS 4.9e-30 38.5 96/141  
:HMM:PFM   123->180 PF01363 * FYVE 3.8e-19 34.5 58/69  
:HMM:PFM   216->230 PF02809 * UIM 3.1e-05 66.7 15/18  
:HMM:PFM   253->290 PF02482 * Ribosomal_S30AE 4e-05 39.5 38/94  
:BLT:SWISS 1->603 VPS27_ASPNC e-174 58.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_01304 GT:GENE CIRG_01302 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 677 SQ:AASEQ MKVLKRRLENKNPNVQLATLKLTDTCVKNGGRHFLLEISSREFMDNLVSLLKTEGPNALNDSVKTKILDLIQSWALATESRSELAYVGETYRKLQWDGFQFPPKTELASSMLDSSAPPEWIDSDVCMRCRTPFTFTNRKHHCRNCGNVFDAQCSSKTLPLPHLGIIQPVRVDDGCYAKLTSKSFNPPGVSNRPGFKSPKTSARMEPRGGRAEADFDEDLKRALQLSLEDAKGKSSSGYVPQSKPTPRATPSKTNGNVNEEEEDSDLKAAIEASLKDMEEQKRKHTAALKNSTSLETPGPGTSATVLAKKDYELTATEAEKINLLATLVDRLQHQPPGTILREPQIQELYESIGALRPKLARTYGETMSKYDLHAKLSTVVRYYDRMLEERLSNTYAQQTLGAYDSLQPAQSSTNLYPSMSSHISDNQGAAESFYLGSGPDRQFPHAYPPMSRQSSVDQYEQRSPSAAAGTAPGMYARPVHSIIPLASHGINPQMPTPKSQAPSKPLAIIFKPTPSTCSCGQMKQDSAHPTGQQPPFAEGQYPQSPVTFQNSQYSQPIAAAASSGQQHPPSRTVAEPLASPPPAMQSTPSYAFQGSQKGGPYEPTFDTTSPPVQYTDQYHQPSYHWQQTTSATQNAYPARPINGTQISEDTSLPTPQSPYQLPLQPQPKPVEESLIEL BL:SWS:NREP 1 BL:SWS:REP 1->603|VPS27_ASPNC|e-174|58.4|594/703| SEG 652->669|lptpqspyqlplqpqpkp| BL:PDB:NREP 2 BL:PDB:REP 4->179|1dvpA|2e-32|40.5|168/217| BL:PDB:REP 214->281|1q0vA|2e-06|43.5|62/81| RP:PDB:NREP 4 RP:PDB:REP 1->92|3d9oA|2e-16|16.7|90/133| RP:PDB:REP 111->153|2ayjA|5e-04|17.1|41/56| RP:PDB:REP 126->180|1dvpA|2e-05|65.5|55/217| RP:PDB:REP 407->596|2btvA|4e-07|6.6|183/845| RP:PFM:NREP 2 RP:PFM:REP 2->95|PF00790|1e-21|52.7|91/138|VHS| RP:PFM:REP 120->179|PF01363|3e-16|60.0|60/68|FYVE| HM:PFM:NREP 4 HM:PFM:REP 1->97|PF00790|4.9e-30|38.5|96/141|VHS| HM:PFM:REP 123->180|PF01363|3.8e-19|34.5|58/69|FYVE| HM:PFM:REP 216->230|PF02809|3.1e-05|66.7|15/18|UIM| HM:PFM:REP 253->290|PF02482|4e-05|39.5|38/94|Ribosomal_S30AE| GO:PFM:NREP 1 GO:PFM GO:0006886|"GO:intracellular protein transport"|PF00790|IPR002014| RP:SCP:NREP 5 RP:SCP:REP 1->112|1jplA|1e-23|22.0|109/161|a.118.9.2| RP:SCP:REP 119->179|1jocA1|2e-20|49.2|59/64|g.50.1.1| RP:SCP:REP 248->284|2ywqA1|4e-04|35.1|37/89|d.204.1.1| RP:SCP:REP 312->390|1wrdA1|2e-08|13.9|79/93|a.7.8.1| RP:SCP:REP 446->644|1f8v.1|5e-05|11.6|198/380|b.121.4.4| HM:SCP:REP 1->103|1elkA_|1.1e-27|45.1|102/0|a.118.9.2|1/1|ENTH/VHS domain| HM:SCP:REP 119->185|1vfyA_|1.7e-22|47.8|67/0|g.50.1.1|1/1|FYVE/PHD zinc finger| OP:NHOMO 833 OP:NHOMOORG 171 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----434-----323221111111-1111112111111111111112322222212121222111111-1111111111111111112-11-21111112112454-9-18ACDDA69769997RH6F6X*I6FAI7895E88B437774D64F6CA7D24695772F7571445---14------2421-3--1323- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 531 STR:RPRED 78.4 SQ:SECSTR HHHHHHHHHHccGGGHHHHHHHHHHHHHHHHHHHcTTTccHHHHTTHHHHHHHHTHTTccGGGHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHTTcccccccc#cccccccccccTTccccccTTTccccccEEccccEEcTTTcccccccccccccccEcEETTEEccHHHHHHHccccTTTccccccccccccccccccccccc####cHHHHHHHHHHHHHHcccccccc######cccccccccccccccccccccHHHHHHHHHHHHHHHHHH########################################################################################################HHHHHEccccTTccEEGGGTcHHHHTTccTTTTccccEEEEEEEccccccccGGGGGccTTccccccccccccccccGGGEEEEcHHHHHHHHHTTcHHHHHHHHHHTccEEEEcccccEEEEEEEcccccHHHHccccEEEEEEccTTTcEEEEEEccEEEEEEEcccccTcTTccTGGGccccccEEEEEEcccccccEEEccTTcGGGcTTccccccGGccccTTcTTcccTTEEccccccccTTcccEEEEEEcccE############################### DISOP:02AL 677-678| PSIPRED cHHHHHHHccccHHHHHHHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccEEEcccccccccEEEcHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //