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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_01606
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  126/199 : Viruses  0/175   --->[See Alignment]
d.51.1
:619 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   268->340 1x4nA PDBj 1e-05 29.7 %
:BLT:PDB   355->440 2opuA PDBj 1e-12 47.4 %
:RPS:PDB   265->441 2anrA PDBj 5e-18 29.5 %
:RPS:SCOP  268->337 1j4wA1  d.51.1.1 * 1e-13 27.5 %
:RPS:SCOP  366->443 1x4nA1  d.51.1.1 * 5e-14 39.0 %
:RPS:SCOP  467->530 2ctjA1  d.51.1.1 * 4e-04 17.9 %
:HMM:SCOP  253->355 1we8A_ d.51.1.1 * 2.8e-17 26.2 %
:HMM:SCOP  358->442 1we8A_ d.51.1.1 * 1.5e-16 31.8 %
:RPS:PFM   273->328 PF00013 * KH_1 4e-05 37.5 %
:RPS:PFM   375->436 PF00013 * KH_1 3e-09 36.2 %
:HMM:PFM   268->331 PF00013 * KH_1 7.7e-16 37.5 56/57  
:HMM:PFM   374->436 PF00013 * KH_1 2.5e-16 34.5 55/57  
:HMM:PFM   588->607 PF05650 * DUF802 0.00089 45.0 20/53  
:BLT:SWISS 230->489 FUBP1_MOUSE 3e-23 33.6 %
:REPEAT 3|257->359|360->459|460->540
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_01608 GT:GENE CIRG_01606 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 619 SQ:AASEQ MTPLNPFEQGLFLAPRKSASRRSLTKQQDPGHSDRCPAPPYLVQVALLSLEWSALRCTPRAPKPPPVSQKKERDHTMADQQNISQILAALAAAQPGGLAAPATFAGSNPSSAPLVNQTGFSLPPPDSTGSVDISGVKPVNTGSVSIADAIAKARGIAAEKGIAYGSNHDQRGADPRRDSRSYHRSRSPSRTPPRATRDVFRDNYNPYRDERRGDRRGNDRAYVRERSFSPRPAGRATDAYPAQPSRPHRGASDRSPPSRRGGGMDDSTETINIDSKLVGLIIGRQGDNLRRIESDTGTRIQFLDSPESNVNIRPCRISGTRAARSDAKAEIFRMISENNAARGAMASADRFASRGPHEPPGRQPGYGEDENSSTQMMVPDRTVGLIIGRGGETIKDLQDRSGCHVIIAPEDKSLNGLRPVNLNGAPRAIQRAKDLILEVVETDSRQGGAPPQREPRGYAPERDTGAPAPERGDDSIFIPKESVGMIIGKVNILPAVGREVDREVVMIGSKQAIEQMKKSILEKVDTFKSRSQARRDDGYSERYSQPQLRSYPQDQAKSSQPSQASAPAAGGDSADPYAMYGGYENYVAMWYAAMAQQQQQQQQPYQQQSPSDPKPPGVP BL:SWS:NREP 1 BL:SWS:REP 230->489|FUBP1_MOUSE|3e-23|33.6|226/651| NREPEAT 1 REPEAT 3|257->359|360->459|460->540| SEG 87->102|laalaaaqpgglaapa| SEG 146->163|iadaiakargiaaekgia| SEG 175->194|prrdsrsyhrsrspsrtppr| SEG 208->220|rderrgdrrgndr| SEG 552->576|pqdqakssqpsqasapaaggdsadp| SEG 596->608|qqqqqqqqpyqqq| BL:PDB:NREP 2 BL:PDB:REP 268->340|1x4nA|1e-05|29.7|71/92| BL:PDB:REP 355->440|2opuA|1e-12|47.4|78/89| RP:PDB:NREP 1 RP:PDB:REP 265->441|2anrA|5e-18|29.5|146/153| RP:PFM:NREP 2 RP:PFM:REP 273->328|PF00013|4e-05|37.5|52/59|KH_1| RP:PFM:REP 375->436|PF00013|3e-09|36.2|58/59|KH_1| HM:PFM:NREP 3 HM:PFM:REP 268->331|PF00013|7.7e-16|37.5|56/57|KH_1| HM:PFM:REP 374->436|PF00013|2.5e-16|34.5|55/57|KH_1| HM:PFM:REP 588->607|PF05650|0.00089|45.0|20/53|DUF802| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF00013|IPR018111| GO:PFM GO:0003723|"GO:RNA binding"|PF00013|IPR018111| RP:SCP:NREP 3 RP:SCP:REP 268->337|1j4wA1|1e-13|27.5|69/74|d.51.1.1| RP:SCP:REP 366->443|1x4nA1|5e-14|39.0|77/79|d.51.1.1| RP:SCP:REP 467->530|2ctjA1|4e-04|17.9|64/82|d.51.1.1| HM:SCP:REP 253->355|1we8A_|2.8e-17|26.2|103/0|d.51.1.1|1/3|Eukaryotic type KH-domain (KH-domain type I)| HM:SCP:REP 358->442|1we8A_|1.5e-16|31.8|85/0|d.51.1.1|2/3|Eukaryotic type KH-domain (KH-domain type I)| OP:NHOMO 368 OP:NHOMOORG 126 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------1-----1111111--------11121111111111111111111111111111111------------------------11----1----------122----299675A3322353A3382Ib6-D6J233175345243213314252331323111131314711-11-------2-131211-1111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 242 STR:RPRED 39.1 SQ:SECSTR ####################################################################################################################################################################################################################################################cccccccccccccccEccccccEEEEEEEEHHHHHHHHcGGGHHHHHHHHHHccEEEEccTTcccTTEEEEEEEEcHHHHHHHHHHHHHHHTccccHHHHHHHHHT#cHHHHHcccHHHTccccGGGGEEEEEEEHHHHHHHHcGGGHHHHHHHHHcccEEEEcccTTccccEEEEEEEccHHHHHHHHHHHHHHHHHcHHHTTccHHHHHHHHccccccTTcc##ccccccEEETTTHHHHHcc################################################################################################################################## DISOP:02AL 39-39,45-45,48-48,619-620| PSIPRED cccccHHHcccEEccccccHHHHHHHcccccccccccccccEEEEEEEEEEEccEEEcccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcHHHccHHccccHHHHHHHHHHHccEEEEcccccccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccccccccEEEEEEEcHHHHHHHccccHHHHHHHHHHHccEEEEccccccccccEEEEEEEcHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEccHHHHHHHcccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccc //