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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_01609
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  493/915 : Eukaryota  173/199 : Viruses  0/175   --->[See Alignment]
d.240.1e.8.1
:648 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->504 1t3nA PDBj 1e-45 37.5 %
:RPS:PDB   15->388 2alzA PDBj 3e-42 36.1 %
:RPS:SCOP  13->292 1t94A2  e.8.1.7 * 5e-55 32.5 %
:RPS:SCOP  354->504 1t3nA1  d.240.1.1 * 8e-06 29.1 %
:HMM:SCOP  9->345 1t94A2 e.8.1.7 * 1.7e-58 33.3 %
:RPS:PFM   23->127,194->226 PF00817 * IMS 3e-18 42.7 %
:HMM:PFM   23->227 PF00817 * IMS 1.4e-44 44.1 143/150  
:HMM:PFM   329->387 PF11799 * IMS_C 1.1e-07 33.9 59/135  
:HMM:PFM   440->471 PF08892 * YqcI_YcgG 0.00083 37.5 32/219  
:BLT:SWISS 16->574 POLI_HUMAN 5e-46 34.6 %

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_01611 GT:GENE CIRG_01609 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 648 SQ:AASEQ MTSLLRKQAALRRDDSRIIIHFDYDCFYASVFETENPALKSLPVAVQQKQIVVTCNYEARRRGLRKLQLIKDAKRTCPDVVIVLGEDLTKFRDASKELHSFLKKYIWGDRVEKLGFDEVFLDVTSMIDHNAQFLNRNDLRNSFFQLDKNDPTVGFSFDAGAFCGPTWPPNACSTRGEETDPEMFSSLGMRLILGSHLANYLRFQLEEHTGYTATVGISTSKLLAKLVGNANKPKNQTTLIPPYSAGTDGQQGNIDRFLCQHEVGEIPGIGFKMANRIRAHILGRQPSTELYQSLTDTDRVTVGAVRSFPNMGPLKLDKILRGGGWPNFVGTKVWCLLNGIDPTDVAAGKVIPSQISIEDSYRQVDSIQAVRKELRTLACNLLRRMHADLTQDAEDEEDIMTGTADEDGREALAKGKKRWLAFPKTLRISTRSRLPPLPDGTHPFNSRRISRSCPIPQFVFSFHESIEALAERLIEETLIPLFRRLHPDKSAYKLSLINIAATNMIECAGSEKSSMGQDIGKMFQNRTRVPAHSLSLNPTSKDAEYIDDRLDTIDMGDSTDSVNPRNDIHDGKEQHSSKTSTTKEIMDNWDEEEVHGWASDDEISADKDSAAPCHECQLCGSLIPSFAAQAHATYHSVRSTEVGCGQQP BL:SWS:NREP 1 BL:SWS:REP 16->574|POLI_HUMAN|5e-46|34.6|451/715| BL:PDB:NREP 1 BL:PDB:REP 16->504|1t3nA|1e-45|37.5|381/388| RP:PDB:NREP 1 RP:PDB:REP 15->388|2alzA|3e-42|36.1|310/373| RP:PFM:NREP 1 RP:PFM:REP 23->127,194->226|PF00817|3e-18|42.7|136/148|IMS| HM:PFM:NREP 3 HM:PFM:REP 23->227|PF00817|1.4e-44|44.1|143/150|IMS| HM:PFM:REP 329->387|PF11799|1.1e-07|33.9|59/135|IMS_C| HM:PFM:REP 440->471|PF08892|0.00083|37.5|32/219|YqcI_YcgG| GO:PFM:NREP 3 GO:PFM GO:0003684|"GO:damaged DNA binding"|PF00817|IPR001126| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00817|IPR001126| GO:PFM GO:0006281|"GO:DNA repair"|PF00817|IPR001126| RP:SCP:NREP 2 RP:SCP:REP 13->292|1t94A2|5e-55|32.5|252/308|e.8.1.7| RP:SCP:REP 354->504|1t3nA1|8e-06|29.1|110/115|d.240.1.1| HM:SCP:REP 9->345|1t94A2|1.7e-58|33.3|300/333|e.8.1.7|1/1|DNA/RNA polymerases| OP:NHOMO 989 OP:NHOMOORG 679 OP:PATTERN --------1111111--------------1-------------1--1--2-21--------------- 111-------------------------------------1----------------1------1--------------1-1------1111-1-----214-1131111--------------1------------------1--1---------------------1------------------------1111111111111111111111111---111111111111111111111111111111111111111-11111--1111111-11111111111111111111111111111111111111111111111-1--1----------11111111-1-211-1--11---1111-111--11---2111------11111----1------------------1--1111--11-----1-121--11--1------111111111-111--1-------------------------------1-11-111111111111111111--11111111-111---111------------------111111111---11--1--111-111111-11111211311111-11-------------------------121111111-1111111111111111111111-----1-------11111111111111111-11111111111111111111111111111111111111111111-111111--111111111111---11-1111111-1111111111-----11111111111-111-111111111111111111-1111-1--211111111111111111111111------1-11--11--------1------1---1--11----11---111----------1-1 ----113-41-1113234233333333111-11222232312211112333233222223331111-1-1--11-1--1-1--11132-12232-11211--2331-132533334A2233233883918T3-53723133-2332322333293314221323331322B22522231C2223122322231-222-1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 468 STR:RPRED 72.2 SQ:SECSTR ####TTccccccccccccEEEEEETTHHHHHHHHHcGGGTTccEEEEETTEEEEEcHHHHHTTccTTEEHHHHHTTcTTcEEEEccccHHHHHHHHHHHHHHHHHcccccEEEETTTEEEEEcHHHHHHHHHHccTTGGGccccccEEGGGccccTTcHHHHHHHTTccccEEEccGGGHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHTccccccEEEccGGGHHHHH##GcHHHHHHTcccGGGcTTccHHHHHHHHHTTTccccHHHHHH#####TcccHHHHHHccHccHHHHHHHHHHHcHHHHHHHHHHHHHHTccccccccHcccccEEEEEEEcTTTcccccTTHHHHHHHHHHHHHHHHH################HHTTEEE###########cEEEEEEEEEEcTTcccccccTTcEEEEEEEEEEEEEccHHHTTGGGGHHHHHHHHHHHHHHHTccccGGGEEEEEEEEEEEEE############################################################################################################################################## DISOP:02AL 648-649| PSIPRED ccccccccccccccccEEEEEEEccHHHHHHHHHHccccccccEEEEcccEEEEEcHHHHHccccccccHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccHHccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHcccccccEEEEcccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHcccccEEEEEEEEEcccccccccccccccEEEEEccccccEEcccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccc //