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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_01749
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  139/199 : Viruses  0/175   --->[See Alignment]
g.41.9
:79 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   35->79 3h0gL PDBj 2e-14 62.2 %
:RPS:PDB   35->79 3cqzL PDBj 4e-14 53.5 %
:RPS:SCOP  35->79 1i3qL  g.41.9.2 * 4e-06 53.3 %
:HMM:SCOP  34->79 1i50L_ g.41.9.2 * 5.5e-14 69.8 %
:RPS:PFM   38->69 PF03604 * DNA_RNApol_7kD 2e-09 62.5 %
:HMM:PFM   38->69 PF03604 * DNA_RNApol_7kD 3.6e-19 68.8 32/32  
:BLT:SWISS 35->79 RPAB4_SCHPO 5e-14 62.2 %

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_01752 GT:GENE CIRG_01749 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 79 SQ:AASEQ MSREAYQVPSFDNQQPQFSAGAGSAPTNANDELLSVIYVCGDCSARVQMKRGDQIRCKECGHRVLYKERTKRMVQFQAR BL:SWS:NREP 1 BL:SWS:REP 35->79|RPAB4_SCHPO|5e-14|62.2|45/63| BL:PDB:NREP 1 BL:PDB:REP 35->79|3h0gL|2e-14|62.2|45/45| RP:PDB:NREP 1 RP:PDB:REP 35->79|3cqzL|4e-14|53.5|43/43| RP:PFM:NREP 1 RP:PFM:REP 38->69|PF03604|2e-09|62.5|32/32|DNA_RNApol_7kD| HM:PFM:NREP 1 HM:PFM:REP 38->69|PF03604|3.6e-19|68.8|32/32|DNA_RNApol_7kD| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF03604|IPR006591| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF03604|IPR006591| GO:PFM GO:0006350|"GO:transcription"|PF03604|IPR006591| RP:SCP:NREP 1 RP:SCP:REP 35->79|1i3qL|4e-06|53.3|45/46|g.41.9.2| HM:SCP:REP 34->79|1i50L_|5.5e-14|69.8|43/0|g.41.9.2|1/1|RNA polymerase subunits| OP:NHOMO 153 OP:NHOMOORG 139 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---11--------1-1111-11111--111111111-111111111111111--1111-11111111111111111111111111111----1-11--1--1---2-1-1-1-1-1-11-121-13121111-1131211--1211121-1111122-1-111111-1-1-11---11--11-1112-1111--1-1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 45 STR:RPRED 57.0 SQ:SECSTR ##################################cccEEETTTTccccccccccccccccccccEEEcccTTccccccc DISOP:02AL 78-80| PSIPRED cccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEccccccEEEcccccHHHHHHcccEEEEEEEc //