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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_02105
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  173/199 : Viruses  0/175   --->[See Alignment]
d.51.1
:366 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   48->198 2jzxA PDBj 1e-21 32.9 %
:BLT:PDB   286->339 1wvnA PDBj 4e-10 50.9 %
:RPS:PDB   48->207 2anrA PDBj 5e-16 29.3 %
:RPS:PDB   263->341 2ctfA PDBj 7e-11 16.2 %
:RPS:SCOP  49->118 1x4nA1  d.51.1.1 * 2e-05 22.9 %
:RPS:SCOP  129->194 2ctlA1  d.51.1.1 * 9e-10 16.7 %
:RPS:SCOP  285->341 1j4wA2  d.51.1.1 * 3e-12 36.8 %
:HMM:SCOP  34->117 1we8A_ d.51.1.1 * 9.9e-13 29.8 %
:HMM:SCOP  120->225 1we8A_ d.51.1.1 * 1.2e-16 30.1 %
:HMM:SCOP  272->361 1khmA_ d.51.1.1 * 1.8e-18 37.1 %
:RPS:PFM   136->194 PF00013 * KH_1 3e-05 38.2 %
:RPS:PFM   291->341 PF00013 * KH_1 4e-05 43.1 %
:HMM:PFM   52->109 PF00013 * KH_1 5.7e-11 37.3 51/57  
:HMM:PFM   136->198 PF00013 * KH_1 2.7e-13 40.0 55/57  
:HMM:PFM   286->348 PF00013 * KH_1 1.7e-18 45.5 55/57  
:BLT:SWISS 37->338 RNC1_SCHPO 1e-76 52.4 %
:PROS 225->232|PS00501|SPASE_I_1
:REPEAT 3|31->102|119->189|269->340
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_02108 GT:GENE CIRG_02105 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 366 SQ:AASEQ MSATEQQQATGAPGHEEGLSESFNRVNLSEQGEDITPKTEEEYAQSMLTLRAIVSTKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTAKAYGMVAKSLLEGAPQMGMGGIIQNNGTHPVRLLISHNQMGTIIGRNGLKIKCIQDASGVRMVAQKEMLPQSTERIVEVQGTPEGIEKAVWEIGKCLIDDWQRGTGTVLYNPAVRANVGGASMNSAFVGPNPNTYSGRPYNRTGNGADFSDHPGTYNRRHNSDAPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKISEIRRSSGARISIAKAAHDETGERMFTIMGSAQANEKALYLLYENLEAEKMRRSQQPQE BL:SWS:NREP 1 BL:SWS:REP 37->338|RNC1_SCHPO|1e-76|52.4|292/398| PROS 225->232|PS00501|SPASE_I_1|PDOC00418| NREPEAT 1 REPEAT 3|31->102|119->189|269->340| SEG 342->357|nekalyllyenleaek| BL:PDB:NREP 2 BL:PDB:REP 48->198|2jzxA|1e-21|32.9|149/160| BL:PDB:REP 286->339|1wvnA|4e-10|50.9|53/74| RP:PDB:NREP 2 RP:PDB:REP 48->207|2anrA|5e-16|29.3|147/153| RP:PDB:REP 263->341|2ctfA|7e-11|16.2|74/102| RP:PFM:NREP 2 RP:PFM:REP 136->194|PF00013|3e-05|38.2|55/59|KH_1| RP:PFM:REP 291->341|PF00013|4e-05|43.1|47/59|KH_1| HM:PFM:NREP 3 HM:PFM:REP 52->109|PF00013|5.7e-11|37.3|51/57|KH_1| HM:PFM:REP 136->198|PF00013|2.7e-13|40.0|55/57|KH_1| HM:PFM:REP 286->348|PF00013|1.7e-18|45.5|55/57|KH_1| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF00013|IPR018111| GO:PFM GO:0003723|"GO:RNA binding"|PF00013|IPR018111| RP:SCP:NREP 3 RP:SCP:REP 49->118|1x4nA1|2e-05|22.9|70/79|d.51.1.1| RP:SCP:REP 129->194|2ctlA1|9e-10|16.7|66/84|d.51.1.1| RP:SCP:REP 285->341|1j4wA2|3e-12|36.8|57/71|d.51.1.1| HM:SCP:REP 34->117|1we8A_|9.9e-13|29.8|84/0|d.51.1.1|1/3|Eukaryotic type KH-domain (KH-domain type I)| HM:SCP:REP 120->225|1we8A_|1.2e-16|30.1|103/0|d.51.1.1|2/3|Eukaryotic type KH-domain (KH-domain type I)| HM:SCP:REP 272->361|1khmA_|1.8e-18|37.1|89/0|d.51.1.1|3/3|Eukaryotic type KH-domain (KH-domain type I)| OP:NHOMO 643 OP:NHOMOORG 173 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------2222222222222222222222222212322222222222222222222222211212242122222222222211-22122222222222321--1-6EG9BF6223-452BF3G2dqC-G6Q342-844621532141193645412262321N3241232-11-1112--22222131-12-1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 266 STR:RPRED 72.7 SQ:SECSTR ###############################ccccccccccccccccEEEEEEEEHHHHHHHHcGGGHHHHHHHHHHccEEEEccccTTccEEEEEEEEcHHHHHHHHHHHHHHHTcHHHHHHHHTccccGGGGEEEEEEEHHHHHHHHcGGGHHHHHHHHcccEEEEccccTTccccEEEEEEEccHHHHHHHHHHHHHHHHccccHTTcccHcccc############################################ccccccccccccccccccccccEEEEEEcccTTHHHHHTTTTcHHHHHHHHccccEEEccTcEEcccccEEEEEEcHHH######################### PSIPRED cccccccccccccccccccHHHHcccccccccccccccccccccccEEEEEEEEcHHHHHHHHcccHHHHHHHHHHHccEEEEEcccccccccEEEEEEcHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHccEEEEEcccccccccEEEEEEEcHHHHHHHHHHHHHHHHHccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHccccHHHHHHHHHHcccEEEEccccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHcccccccccc //