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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_02188
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  153/199 : Viruses  0/175   --->[See Alignment]
d.58.7
:308 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   64->231 1u1pA PDBj 3e-08 31.2 %
:RPS:PDB   58->209 2adbA PDBj 5e-12 14.4 %
:RPS:PDB   186->231 1cvjF PDBj 7e-11 30.4 %
:RPS:SCOP  75->163 1u2fA  d.58.7.1 * 3e-09 16.3 %
:RPS:SCOP  173->231 1wi8A  d.58.7.1 * 9e-12 27.6 %
:HMM:SCOP  70->244 1u1qA_ d.58.7.1 * 1.6e-25 31.8 %
:RPS:PFM   75->152 PF00076 * RRM_1 2e-05 34.3 %
:HMM:PFM   75->151 PF00076 * RRM_1 1.1e-09 30.9 68/70  
:HMM:PFM   187->242 PF00076 * RRM_1 4.2e-15 40.0 55/70  
:BLT:SWISS 68->231 RNP24_SCHPO 4e-35 44.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_02191 GT:GENE CIRG_02188 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 308 SQ:AASEQ MGDRPDSSPNASRKRKLDPDIEIDLAAPEPPSKKALRKAKKKSTAKVDDAQAITSKSETQPPPQEPTNKRSGFGIWIGNLPFSVAQDDLRNFLTTKGPFTPDEITRIHLPQGEKRNGKQLNKGFAYIDFSTSGAVQRAIALSEQLLAGRAVLIKDANNFAGRPDKPRDDGGTSMGSKTSANPPSKKIFVGNLAFDITKEMLEEHYRPCGGISHVHIATFEDSGKCKGYGWVEFEELESAAAADDGALAPIEGSSLLRSQLRRGRKPAVISPKPKARAQAGSDSRYSEETVQRLSGAIVESQGKKTTFD BL:SWS:NREP 1 BL:SWS:REP 68->231|RNP24_SCHPO|4e-35|44.4|162/369| SEG 33->46|kkalrkakkkstak| SEG 232->248|efeelesaaaaddgala| SEG 253->262|ssllrsqlrr| BL:PDB:NREP 1 BL:PDB:REP 64->231|1u1pA|3e-08|31.2|144/183| RP:PDB:NREP 2 RP:PDB:REP 58->209|2adbA|5e-12|14.4|125/127| RP:PDB:REP 186->231|1cvjF|7e-11|30.4|46/131| RP:PFM:NREP 1 RP:PFM:REP 75->152|PF00076|2e-05|34.3|70/71|RRM_1| HM:PFM:NREP 2 HM:PFM:REP 75->151|PF00076|1.1e-09|30.9|68/70|RRM_1| HM:PFM:REP 187->242|PF00076|4.2e-15|40.0|55/70|RRM_1| GO:PFM:NREP 1 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00076|IPR000504| RP:SCP:NREP 2 RP:SCP:REP 75->163|1u2fA|3e-09|16.3|86/90|d.58.7.1| RP:SCP:REP 173->231|1wi8A|9e-12|27.6|58/104|d.58.7.1| HM:SCP:REP 70->244|1u1qA_|1.6e-25|31.8|154/0|d.58.7.1|1/1|RNA-binding domain, RBD| OP:NHOMO 365 OP:NHOMOORG 153 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -----1------11122231112221122333311213231433222211232312212333211111111111111-111-112122-222221212222-1312----14-1-43-1121-263281Cg7-45C22-17133223121311322233---1-121--1---22----2----12135331--1-11- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 185 STR:RPRED 60.1 SQ:SECSTR ##############################################cccccEEcccccccccccccccEEEccEEEccccccTTHHHHHHHHHTTTccEEEEEEEEETcccEEEEcTTccTEEEEEEEEccHHHHHHHHHHHcccccTTccccEEEEccccccccccTTccEEEEccccTTTTEEEccccccccccccccTTTcTTTcccEEEEEEEEcTTTccEEEEEEE############################################################################# PSIPRED ccccccccccHHHHHHcccHHHHHHcccccHHHHHHHHHHccccccccccEEEccccccccccccHHHHccccEEEEccccccccHHHHHHHHHHHccEEEEEEEEEccccccccccccccccEEEEEEccHHHHHHHHHHcccEEccEEEEEEEccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHcccEEEEEEEEcccccccccEEEEEEccHHHHHHHHHHcccEEccEEEccEEEEEEcccccccccHHHccccccccccccccccccccccccHHccEEccc //