[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_02904
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  48/68 : Bacteria  69/915 : Eukaryota  106/199 : Viruses  0/175   --->[See Alignment]
d.68.2
:563 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   19->258 1qmhB PDBj 3e-20 36.6 %
:RPS:SCOP  19->305 1qmhA2  d.68.2.1 * 9e-40 34.6 %
:RPS:SCOP  511->563 1qmhA2  d.68.2.1 * 1e-05 28.3 %
:HMM:SCOP  19->264 1qmhA2 d.68.2.1 * 3.5e-38 36.0 %
:RPS:PFM   25->247,488->563 PF01137 * RTC 3e-44 60.5 %
:HMM:PFM   22->100 PF01137 * RTC 2.3e-26 46.2 78/228  
:HMM:PFM   182->563 PF01137 * RTC 1.5e-13 29.9 117/228  
:BLT:SWISS 19->228 RTCA_DESK1 2e-23 44.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_02907 GT:GENE CIRG_02904 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 563 SQ:AASEQ MAMEENMYNSLPVDYLPPMIHLDGSTLEGGGQLLRNAVALSALTSRPVKITRIRANRQGPGLRPSHAVAIQCLRDVCGGTAVNATVGSSEITFYPRGQLREDGDVASEEEANDGDEGLAAPLEAMIKLESMNDVLPIQSEYNIRLKTPGSAFLIFQALYPYLLYAGACHNAQVTERNANLRESSIKLSVTGGTNVSFSLSHDYFSQVLIPNFAKLGLPQLSVNLKHRGWSAGQTNLGSVSFLITPLKLRETREESNEGAASVDNHESLSDSGAFSPIFPRIDLHVLRRGRITQIDITVLAPDMSLDEAGSARRSKRGNKYHHPNSKQSHITDSKDRSQEEDLGLDSDSDGSPEMQQPGKRFAPNSVREFIENYTFEKVSHEFGAKRKGNSSFQPPKIELHWSESTHHRSRIYVLLVAHTSTGFRLGRDALLGSPSSLESNKKSGHKGPRKSKRKGKSRTNADHKTGTDLERMIGDLVDQCVEDLMYELADGSGTRDLKKILGDGFSNRFLDSFMRDQVVVFQALGKLGAGDADMPLNQDEERDLSLHTRTAMWVCEQMLGVKF BL:SWS:NREP 1 BL:SWS:REP 19->228|RTCA_DESK1|2e-23|44.5|155/357| SEG 341->351|dlgldsdsdgs| SEG 441->458|kksghkgprkskrkgksr| BL:PDB:NREP 1 BL:PDB:REP 19->258|1qmhB|3e-20|36.6|183/335| RP:PFM:NREP 1 RP:PFM:REP 25->247,488->563|PF01137|3e-44|60.5|236/333|RTC| HM:PFM:NREP 2 HM:PFM:REP 22->100|PF01137|2.3e-26|46.2|78/228|RTC| HM:PFM:REP 182->563|PF01137|1.5e-13|29.9|117/228|RTC| RP:SCP:NREP 2 RP:SCP:REP 19->305|1qmhA2|9e-40|34.6|211/239|d.68.2.1| RP:SCP:REP 511->563|1qmhA2|1e-05|28.3|44/239|d.68.2.1| HM:SCP:REP 19->264|1qmhA2|3.5e-38|36.0|189/240|d.68.2.1|1/1|EPT/RTPC-like| OP:NHOMO 240 OP:NHOMOORG 223 OP:PATTERN 111111111111111111111111----------111-1111--1-1--111111111111---1-11 -1--------------------------------------------------------------------------------------------------------------------------------------------------1-------------------11-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1-1-1---1---------------1------------------111---11-11111111---------------------------------------------------------------1-------------1111111111-1111111111111111111----------1---1-111-1----111--11-----------------------------1--------------------1-------------1--1--------------------------------------------------------------------------------------------------------- ----11--------1-11-11111-1111111111111111111-11-111-1--1-11111----------------------------411111-----------1--211211-1--1-1111-22261-21111-11-111-1-1-1111111111111112-1121--1---111---11----1-11------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 183 STR:RPRED 32.5 SQ:SECSTR ##################cEEEETTcTTccHHHHHHHHHHHHHHcccEEEEcTTTTcccccccHHHHHHHHHHHHHHTcEEEcccTTcccEEEEc#cccc#####################################ccEEEEEEEEEEEHHHHHHHHHHHHTTc################cccEEEEEEEEcccTTcccTHHHHHTHHHHHHHHTccEEEEEEEcccTTccc###EEEEEEEccccccccEEccccc################################################################################################################################################################################################################################################################################################################# DISOP:02AL 563-564| PSIPRED ccccccccccccHHHcccEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHHcccEEEEEEccEEEEEEEcccEEEcccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEEEEEccccccccEEEEEEEccEEEEcccEEEccccEEEEccccHHccHHcccccccccEEEccccEEEEEEEEEEcccccccHHHHHHccccccEEccccccccEEcccccccccccccccccccccHHHHcccEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccEEEEEEEEEccccccccHHHHccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccEEHHHHHHHHHHHHcccc //