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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_02916
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  173/199 : Viruses  0/175   --->[See Alignment]
g.44.1g.66.1
:335 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   237->275 2ecjA PDBj 2e-04 38.5 %
:BLT:PDB   248->300 2csyA PDBj 4e-18 60.4 %
:RPS:PDB   175->208 2cqeA PDBj 1e-04 38.2 %
:RPS:PDB   242->289 3dwdB PDBj 3e-08 12.5 %
:RPS:SCOP  176->208 2cqeA1  g.66.1.1 * 5e-07 39.4 %
:RPS:SCOP  231->289 1fbvA4  g.44.1.1 * 5e-09 23.7 %
:HMM:SCOP  165->204 1m9oA_ g.66.1.1 * 2e-08 30.0 %
:HMM:SCOP  245->311 1chcA_ g.44.1.1 * 1.1e-12 26.9 %
:RPS:PFM   242->283 PF11789 * zf-Nse 2e-04 45.2 %
:HMM:PFM   175->195 PF00642 * zf-CCCH 2.4e-10 47.6 21/27  
:HMM:PFM   252->289 PF00097 * zf-C3HC4 1.2e-07 34.2 38/42  
:BLT:SWISS 50->300 CWC24_ASPFU 2e-99 69.9 %
:PROS 267->276|PS00518|ZF_RING_1
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_02919 GT:GENE CIRG_02916 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 335 SQ:AASEQ MDEASSEQPIAPIAFKKRSAKAKSSVRKKAPSPPPAADSDSDLSSFEDEDEGRAVKRRRKNAVITASSTSAPANRQESDEPSAARPLPAGNDATKHSNWYDEEAGNDELSAKNLLGKTRSRPGAPEGGHDGVYRGSSKYQSFIQKNPDAPSKQFGPIKAPTNIRTVTFTDFAPDVCKDYKQTGFCGFGDTCKFLHAREDYKQGWELDRDWDIQTKGKKIVGRTVASANRDKRLDEDGSDDEEEMLESIPFACIICKQPYKNPVTTKCGHYFCESCALQRYRKNPSCAACGSGTGGVFNVAKKLTKLLERKRERAQRKREMAIEAGEEVSEEESEG BL:SWS:NREP 1 BL:SWS:REP 50->300|CWC24_ASPFU|2e-99|69.9|246/339| PROS 267->276|PS00518|ZF_RING_1|PDOC00449| SEG 14->45|afkkrsakakssvrkkapspppaadsdsdlss| SEG 301->334|kkltkllerkreraqrkremaieageevseeese| BL:PDB:NREP 2 BL:PDB:REP 237->275|2ecjA|2e-04|38.5|39/58| BL:PDB:REP 248->300|2csyA|4e-18|60.4|53/81| RP:PDB:NREP 2 RP:PDB:REP 175->208|2cqeA|1e-04|38.2|34/98| RP:PDB:REP 242->289|3dwdB|3e-08|12.5|48/114| RP:PFM:NREP 1 RP:PFM:REP 242->283|PF11789|2e-04|45.2|42/56|zf-Nse| HM:PFM:NREP 2 HM:PFM:REP 175->195|PF00642|2.4e-10|47.6|21/27|zf-CCCH| HM:PFM:REP 252->289|PF00097|1.2e-07|34.2|38/42|zf-C3HC4| RP:SCP:NREP 2 RP:SCP:REP 176->208|2cqeA1|5e-07|39.4|33/56|g.66.1.1| RP:SCP:REP 231->289|1fbvA4|5e-09|23.7|59/79|g.44.1.1| HM:SCP:REP 165->204|1m9oA_|2e-08|30.0|40/40|g.66.1.1|1/1|CCCH zinc finger| HM:SCP:REP 245->311|1chcA_|1.1e-12|26.9|67/0|g.44.1.1|1/1|RING/U-box| OP:NHOMO 210 OP:NHOMOORG 173 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1111111-1---111-111111111111-111111111111111111111122111111111111111-11-1111111111111111-12111111111-11111-1112112113111----11-21272-223-1112--221-2-1211-1111-1111112111121111-11161111111-11411111121 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 126 STR:RPRED 37.6 SQ:SECSTR #########################################################################################################################################################################TTccccccHHHHTccccccTTcccccccccHHHHHHHHHHHT#####cccccccccHHHHHcccccccccccHHHHHTcTTccTTTccccccEEEGGGTEEEcHHHHHHHTTTcTTTccEcccccccccEc################################### PSIPRED ccccccccccccEEEEccccccccccccccccccccccccHHHccccHHcccccccccccccccccHHcccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEccccccHHHHcccccccccccccccccccEEEEEEEEcccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHccccEEcccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccc //