[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_02941
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  196/199 : Viruses  0/175   --->[See Alignment]
b.2.7d.110.4
:432 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->431 2jkrM PDBj e-122 54.1 %
:RPS:PDB   62->135 2an7A PDBj 9e-14 9.5 %
:RPS:PDB   159->431 1bw8A PDBj 7e-66 52.2 %
:RPS:SCOP  1->139 1gw5M2  d.110.4.2 * 6e-32 58.3 %
:RPS:SCOP  159->431 1bw8A  b.2.7.1 * 5e-65 52.2 %
:HMM:SCOP  1->139 1gw5S_ d.110.4.2 * 1.1e-38 36.7 %
:HMM:SCOP  159->432 1i31A_ b.2.7.1 * 1.5e-94 47.6 %
:RPS:PFM   2->123 PF01217 * Clat_adaptor_s 1e-11 31.4 %
:RPS:PFM   159->429 PF00928 * Adap_comp_sub 5e-67 48.6 %
:HMM:PFM   160->432 PF00928 * Adap_comp_sub 5e-89 42.5 259/263  
:HMM:PFM   1->128 PF01217 * Clat_adaptor_s 2.1e-07 23.6 127/142  
:BLT:SWISS 1->431 AP2M_DICDI e-129 52.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_02944 GT:GENE CIRG_02941 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 432 SQ:AASEQ MLSGILIFNQKGENLIFRAFRNDCRPRLADIFRIQVISNAQVRSPILTLGSTTFSHVKHENIYLVAVTKSNANAALVFEFLYRLVLLGKGYFGKFDEEAVKNNFVLIYELLDEILDFGYPQNTETDTLKMYITTEGVKSSLTKSPTDSSRITMQATGALSWRRSDIKYRKNEAFVDVIEDVNLLMSATGTVLRADVNGQIIMRAYLSGTPECKFGLNDRLLLDGDEASGRARATRAAAGSVTLEDCQFHQCVRLGRFDADRIISFVPPDGEFELMRYRATENVNLPFKVHPIVREIGTTKVEYSIAIKANYGNKLFATNVVIRIPTPLNAAKVSERTTQGRAKYEPEHNNIVWKIARFSGQSEYVLTAEATLTSTTSQKAWSRPPLSLSFNLLMFTSSGLLVRYLKVFEKNNYSSVKWVRYMTRAGSYEIRF BL:SWS:NREP 1 BL:SWS:REP 1->431|AP2M_DICDI|e-129|52.9|431/439| SEG 227->240|asgraratraaags| SEG 366->377|ltaeatltstts| BL:PDB:NREP 1 BL:PDB:REP 1->431|2jkrM|e-122|54.1|403/409| RP:PDB:NREP 2 RP:PDB:REP 62->135|2an7A|9e-14|9.5|74/83| RP:PDB:REP 159->431|1bw8A|7e-66|52.2|251/256| RP:PFM:NREP 2 RP:PFM:REP 2->123|PF01217|1e-11|31.4|121/140|Clat_adaptor_s| RP:PFM:REP 159->429|PF00928|5e-67|48.6|255/258|Adap_comp_sub| HM:PFM:NREP 2 HM:PFM:REP 160->432|PF00928|5e-89|42.5|259/263|Adap_comp_sub| HM:PFM:REP 1->128|PF01217|2.1e-07|23.6|127/142|Clat_adaptor_s| GO:PFM:NREP 8 GO:PFM GO:0005515|"GO:protein binding"|PF01217|IPR000804| GO:PFM GO:0006886|"GO:intracellular protein transport"|PF01217|IPR000804| GO:PFM GO:0016192|"GO:vesicle-mediated transport"|PF01217|IPR000804| GO:PFM GO:0030117|"GO:membrane coat"|PF01217|IPR000804| GO:PFM GO:0005515|"GO:protein binding"|PF00928|IPR008968| GO:PFM GO:0006886|"GO:intracellular protein transport"|PF00928|IPR008968| GO:PFM GO:0016192|"GO:vesicle-mediated transport"|PF00928|IPR008968| GO:PFM GO:0030131|"GO:clathrin adaptor complex"|PF00928|IPR008968| RP:SCP:NREP 2 RP:SCP:REP 1->139|1gw5M2|6e-32|58.3|139/141|d.110.4.2| RP:SCP:REP 159->431|1bw8A|5e-65|52.2|251/256|b.2.7.1| HM:SCP:REP 1->139|1gw5S_|1.1e-38|36.7|139/142|d.110.4.2|1/1|SNARE-like| HM:SCP:REP 159->432|1i31A_|1.5e-94|47.6|273/277|b.2.7.1|1/1|Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor| OP:NHOMO 1040 OP:NHOMOORG 196 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 3322444-93324433332333323233332322323333333322333333333323233343443314333333323333334333-33333933333333334-4659BD66A68775676BA7C7c*B1DDG4674867B547544756B8667545535344434756551334y4442365A73644455445 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 414 STR:RPRED 95.8 SQ:SECSTR cccEEEEEcTTccEEEEEEccTTcccHHHHHHHTTTTccccccccEEEccccEEEEEEccccccccccHHHHHHHHHHHHHHTccHHHHHHHHTcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHcc##########cc#cTTccccccccccEEEEEEEEEEEEEEcTTccEEEEEEEEEEEEEEEcccccEEEEEEccccccccccccccc######cccccccEEEEcTTccccTTTccccEEEccccEEEEEEEEEEcccccccEEEEEEEEEETTTEEEEEEEEEEcccTTcEEEEEEEEEEccTTEEEEEEEEcccEEEEETTTTEEEEEEEEEEcccEEEEEEEEEEccccTTcccccccEEEEEEcEcccTTcccEEEEEEEcccGGGcEEEEEEEEEEEEEEEc# PSIPRED ccEEEEEEcccccEEEEEEccccccccHHHHHHHHHHccccccccEEEEccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccEEEcccHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccccccEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEcccccEEEEEEccHHHcccccccccccccccccccEEEEEEEEcccccHHHHccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEEccccccccccEEEEEEEccccccccEEEEcccEEEEEEcccEEEEEEccccccccEEEEEEEEEcccccccccccccEEEEEEEccEEcccEEEEEEEEEccccccccccEEEEEEcccEEEEc //