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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_02991
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  176/199 : Viruses  0/175   --->[See Alignment]
a.189.1a.5.2d.15.1
:371 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   3->75,133->181,249->368 1oqyA PDBj 3e-20 52.5 %
:RPS:PDB   1->73 2bweS PDBj 7e-17 34.7 %
:RPS:PDB   137->182 2dklA PDBj 1e-07 26.1 %
:RPS:PDB   325->368 1dv0A PDBj 7e-07 63.6 %
:RPS:SCOP  1->75 1wjuA  d.15.1.1 * 7e-18 22.7 %
:RPS:SCOP  131->182 1vegA  a.5.2.1 * 2e-07 19.2 %
:RPS:SCOP  251->305 2f4mB1  a.189.1.1 * 9e-09 45.5 %
:RPS:SCOP  314->368 1wgnA  a.5.2.1 * 2e-07 20.0 %
:HMM:SCOP  1->92 1uelA_ d.15.1.1 * 4.9e-24 34.8 %
:HMM:SCOP  113->182 1vg5A_ a.5.2.1 * 2.6e-12 34.3 %
:HMM:SCOP  251->307 1x3zB1 a.189.1.1 * 5.9e-19 56.1 %
:HMM:SCOP  298->367 1vg5A_ a.5.2.1 * 5.4e-16 30.0 %
:RPS:PFM   14->63 PF00240 * ubiquitin 1e-08 44.0 %
:RPS:PFM   142->176 PF00627 * UBA 8e-04 42.9 %
:RPS:PFM   252->305 PF09280 * XPC-binding 5e-07 53.7 %
:HMM:PFM   251->306 PF09280 * XPC-binding 1.7e-25 71.4 56/59  
:HMM:PFM   8->75 PF00240 * ubiquitin 1.4e-23 41.8 67/69  
:HMM:PFM   141->176 PF00627 * UBA 7.2e-11 47.2 36/37  
:HMM:PFM   327->361 PF00627 * UBA 9.8e-12 37.1 35/37  
:BLT:SWISS 1->71,131->370 RHP23_SCHPO 2e-41 50.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_02994 GT:GENE CIRG_02991 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 371 SQ:AASEQ MKLTFRDLKQQKFTIEAEPSETIGQLKEKISQEKGWDAAQQKLIYSGKILQDVNTIESYNIEEKGFIVCMVSKPKAQPAPSTPAGPSQTPATPAAPSSTPAAPSAPAPATNAPSAPPATPSPATAGATFNDPSALLMGPQSETAVQQMEAMGFARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAARQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLNNLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDDDAQLPPGAHAISVTEEERDAIERLCRLGFSRDAVIQAYFACDKNEELAANFLFEQPEDEGDN BL:SWS:NREP 1 BL:SWS:REP 1->71,131->370|RHP23_SCHPO|2e-41|50.4|301/368| SEG 76->128|aqpapstpagpsqtpatpaapsstpaapsapapatnapsappatpspatagat| SEG 184->213|aeqeaarqqaratapsnaaapastqpaant| SEG 223->247|eaaaqaaqggggargtrggattgeg| SEG 261->274|qqlrqlvqqqpqml| BL:PDB:NREP 1 BL:PDB:REP 3->75,133->181,249->368|1oqyA|3e-20|52.5|242/363| RP:PDB:NREP 3 RP:PDB:REP 1->73|2bweS|7e-17|34.7|72/73| RP:PDB:REP 137->182|2dklA|1e-07|26.1|46/85| RP:PDB:REP 325->368|1dv0A|7e-07|63.6|44/45| RP:PFM:NREP 3 RP:PFM:REP 14->63|PF00240|1e-08|44.0|50/68|ubiquitin| RP:PFM:REP 142->176|PF00627|8e-04|42.9|35/37|UBA| RP:PFM:REP 252->305|PF09280|5e-07|53.7|54/58|XPC-binding| HM:PFM:NREP 4 HM:PFM:REP 251->306|PF09280|1.7e-25|71.4|56/59|XPC-binding| HM:PFM:REP 8->75|PF00240|1.4e-23|41.8|67/69|ubiquitin| HM:PFM:REP 141->176|PF00627|7.2e-11|47.2|36/37|UBA| HM:PFM:REP 327->361|PF00627|9.8e-12|37.1|35/37|UBA| GO:PFM:NREP 3 GO:PFM GO:0003684|"GO:damaged DNA binding"|PF09280|IPR015360| GO:PFM GO:0006289|"GO:nucleotide-excision repair"|PF09280|IPR015360| GO:PFM GO:0043161|"GO:proteasomal ubiquitin-dependent protein catabolic process"|PF09280|IPR015360| RP:SCP:NREP 4 RP:SCP:REP 1->75|1wjuA|7e-18|22.7|75/100|d.15.1.1| RP:SCP:REP 131->182|1vegA|2e-07|19.2|52/83|a.5.2.1| RP:SCP:REP 251->305|2f4mB1|9e-09|45.5|55/58|a.189.1.1| RP:SCP:REP 314->368|1wgnA|2e-07|20.0|55/63|a.5.2.1| HM:SCP:REP 1->92|1uelA_|4.9e-24|34.8|89/95|d.15.1.1|1/1|Ubiquitin-like| HM:SCP:REP 113->182|1vg5A_|2.6e-12|34.3|70/0|a.5.2.1|1/2|UBA-like| HM:SCP:REP 251->307|1x3zB1|5.9e-19|56.1|57/0|a.189.1.1|1/1|XPC-binding domain| HM:SCP:REP 298->367|1vg5A_|5.4e-16|30.0|70/0|a.5.2.1|2/2|UBA-like| OP:NHOMO 288 OP:NHOMOORG 176 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -111111-----1111111111111111--1111111111211111111111111111111111111111111112112111111111-11111111111121111-15-23422331-1113234-2-5R2-225222222232-22-1211321221111121112111--11-1114111-13476162-1111-1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 251 STR:RPRED 67.7 SQ:SECSTR EEEEEEETTEcEEEEEEcTTccHHHHHHHHHTTTcccGGGEEEEETTEEccTTccGGGGTccTTcEEEEEEcccc########################################################cccccHHHHHHHHHHHHHHHTccHHHHHHHHHHTTccHHHHHHHHHTTcccT################################################################HcTTHHHHHcHHHHHHHHcTTTcTTHHHHHHTTTTTTcHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHccccccc PSIPRED cEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHcccccccccccccccEEEccHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHcccccccc //