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Coccidioides immitis RMSCC 2394 (cimm2)
Gene : CIRG_10402
DDBJ      :             
Swiss-Prot:             

Homologs  Archaea  17/68 : Bacteria  536/915 : Eukaryota  41/199 : Viruses  0/175   --->[See Alignment]
b.47.1d.113.1
:538 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->90 1nqzA PDBj 2e-05 29.8 %
:BLT:PDB   308->497 1l1jA PDBj 7e-17 41.0 %
:RPS:PDB   2->120 3dkuA PDBj 1e-06 7.6 %
:RPS:PDB   341->527 1befA PDBj 6e-18 25.8 %
:RPS:SCOP  1->113 1nqyA  d.113.1.1 * 6e-13 25.9 %
:RPS:SCOP  341->527 1befA  b.47.1.3 * 3e-18 25.8 %
:HMM:SCOP  1->92 1u20A1 d.113.1.1 * 3.4e-21 42.9 %
:HMM:SCOP  330->526 1l1jA_ b.47.1.1 * 4.2e-35 31.8 %
:RPS:PFM   407->508 PF00949 * Peptidase_S7 8e-04 34.1 %
:HMM:PFM   3->95 PF00293 * NUDIX 3.4e-18 37.6 93/135  
:HMM:PFM   150->289 PF02674 * Colicin_V 1.9e-11 16.7 138/146  
:HMM:PFM   361->508 PF00089 * Trypsin 4.8e-11 24.8 145/219  
:BLT:SWISS 1->94 NDX3_CAEEL 5e-08 29.8 %
:BLT:SWISS 361->517 DEGP1_ARATH 9e-15 33.5 %
:PROS 13->34|PS00893|NUDIX_BOX
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Abbreviations Back to title page
GT:ID CIRT_10407 GT:GENE CIRG_10402 GT:PRODUCT GT:DATABASE Broad_Institute GT:ORG cimm2 LENGTH 538 SQ:AASEQ MRSHPGQVSFPGGRLDPGETAEEAALREAWEETGLDPTGVDVVGRLPALWIPFSNHAVVPIIAWWREPSPVTTRSVEEVHAVYRVPLSDLMDPAHRIQVEGCHPLGLYRWNHQPLLHLSRVDLGDSGRPDQGVARIHAAGTRTESAVNFLDWILIVLVGAYALSGYWQGFITGAFATGGLLLGGFIGIWLAPKVLGSAAPSLWVSLGALFVVIACASIGQAVLQYGGVRVRDEITWQPARIVDALGGSLLSAAAVLVVAWALGVAVSGAQINGLTPAVRGSAILAKVDSIMPSPADRALRAFNDVVGTSFFPRYLEPFARERIVEVGPGPRRMLTDPDVVRAGESVLKIRGANECGKGVEGTGFVIGRGYLMTNAHVVAGVDDPNVIVGDGANDAKVVHYDPEIDIAVLKFKGGGNLDRLEFDRTAAAEDPIAVLGYPQDGPFDVQPGRIRAEQRLRSPDIYGVGTVIRDVYSVRSLIRPGNSGGPIVDSEGDVVGVVFAASVTDSETGYALTTDQVIDIAREARSQTAAVDTGACAG BL:SWS:NREP 2 BL:SWS:REP 1->94|NDX3_CAEEL|5e-08|29.8|94/188| BL:SWS:REP 361->517|DEGP1_ARATH|9e-15|33.5|155/439| PROS 13->34|PS00893|NUDIX_BOX|PDOC00695| TM:NTM 4 TM:REGION 145->167| TM:REGION 170->192| TM:REGION 198->220| TM:REGION 242->264| SEG 19->32|etaeeaalreawee| SEG 171->188|itgafatgglllggfigi| SEG 244->269|alggsllsaaavlvvawalgvavsga| BL:PDB:NREP 2 BL:PDB:REP 6->90|1nqzA|2e-05|29.8|84/171| BL:PDB:REP 308->497|1l1jA|7e-17|41.0|161/226| RP:PDB:NREP 2 RP:PDB:REP 2->120|3dkuA|1e-06|7.6|118/153| RP:PDB:REP 341->527|1befA|6e-18|25.8|163/177| RP:PFM:NREP 1 RP:PFM:REP 407->508|PF00949|8e-04|34.1|91/150|Peptidase_S7| HM:PFM:NREP 3 HM:PFM:REP 3->95|PF00293|3.4e-18|37.6|93/135|NUDIX| HM:PFM:REP 150->289|PF02674|1.9e-11|16.7|138/146|Colicin_V| HM:PFM:REP 361->508|PF00089|4.8e-11|24.8|145/219|Trypsin| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00949|IPR001850| GO:PFM GO:0003724|"GO:RNA helicase activity"|PF00949|IPR001850| GO:PFM GO:0005524|"GO:ATP binding"|PF00949|IPR001850| RP:SCP:NREP 2 RP:SCP:REP 1->113|1nqyA|6e-13|25.9|112/170|d.113.1.1| RP:SCP:REP 341->527|1befA|3e-18|25.8|163/177|b.47.1.3| HM:SCP:REP 1->92|1u20A1|3.4e-21|42.9|91/0|d.113.1.1|1/1|Nudix| HM:SCP:REP 330->526|1l1jA_|4.2e-35|31.8|195/228|b.47.1.1|1/1|Trypsin-like serine proteases| OP:NHOMO 1034 OP:NHOMOORG 594 OP:PATTERN --1-----1111111111------1---------1-----------1-----------------1-12 2223323333333313333-3233333333333333423443231112-121433212--44214324433-------1-1-3-----111--1--1------1131-1111111111111111-------11---2-------122114222122211221--2122323-11--1211-131--2211-11111111--1-111--112--1-111----11--------4-11111111111111-111--11-11-111111--111-1211111----------------------------------------------11--------1-111--1111-1---1---12221112112112-1-1215-225111112342253232-2222222222222-33233321131-311133222323212122-123222121111111121121-2-----1--------------------1111------1111122222322222333322222222333331232341231334222223211212111111111125211111122112--1111131--12221244321111-11111--1-------11-1-------11---1-111111111111-11111-----213----------1-1-------------------------------------1----------------1----------11111111111---------111132111---------------22212222222122222222222221333------------------------11222222221111------33331--1--1111--------------------------1111111111-3- ---------------------------------------1--------------------------------------------------------------------4----111-11-1-1122-2-382-21412--2-111-1---1--11-111-------------------1P-----313--12--1---4 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 365 STR:RPRED 67.8 SQ:SECSTR #ccccEEEEccEEEccTTccHHHHHHHHHHHHHcccccccEEEEEEEEEcTTccEEEEEEEEEEccccccccccccTTccEEEEEcHHHHHHccccccTHHHHHHHHHHHcccccGGGGc#################################################################################################################################################################cHHHHHHHHHHHHHHHTccccccccccccccHHccccTHHHHHHHHcccccccccccEEcccccccccccccccccccccccEEccHccEEccHHHHTTcHHHcccccccTcccccccEETTTTEEccHHHccccHccccccccccccEEEccEccccccccccTTcccEEEccccEEEccccEEcccEEccccccccTTcTTcEEEEccccEEEEEEEEEEccccEEEEEEHHHHTTTcccTTTc########### DISOP:02AL 538-539| PSIPRED ccccccEEEcccccccccccHHHHHHHHHHHHHcccHHHEEEEEEccccEEcccccEEEEEEEEEccccccccccHHHHHHHHHccHHHHccHHHcEEEEEEEEccEEEEccEEEEEEEEEccccccccEEEEEEEEcccccEEcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccEEEHHHHccccccccccHHHHHHHHccccccccccccccccccccccccHHHccHHHHHHHHccEEEEEEcccccccEEEEEEEEEccEEEEEHHHHccccEEEEEEccccEEEEEEEEcccccEEEEEEcccccccEEEcccccccccEEEEEEccccccccEEEEEEEcccccccccccccccccEEEEEEEEcccccccccEEEcccccEEEEEEEcccccccEEEEEEHHHHHHHHHHHHHcccccccEEccc //