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Clostridium perfringens str. 13 (cper0)
Gene : CPE0027
DDBJ      :CPE0027      hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  5/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.52.1
:379 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   201->361 1xmxA PDBj 3e-05 28.6 %
:RPS:SCOP  203->379 1xmxA  c.52.1.26 * 8e-44 27.3 %
:HMM:SCOP  1->380 1xmxA_ c.52.1.26 * 6.7e-66 30.5 %
:RPS:PFM   19->371 PF09002 * DUF1887 1e-10 28.1 %
:HMM:PFM   9->376 PF09002 * DUF1887 5.3e-21 23.3 352/382  
:BLT:SWISS 277->344 EPTA_SALTY 8e-04 32.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB79733.1 GT:GENE CPE0027 GT:PRODUCT hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 40045..41184 GB:FROM 40045 GB:TO 41184 GB:DIRECTION + GB:GENE CPE0027 GB:PRODUCT hypothetical protein GB:NOTE 379 aa, partially similar to gpu:AE004265_8 hypothetical protein from Vibrio cholerae (383 aa); 27.3% identity in 161 aa overlap GB:PROTEIN_ID BAB79733.1 LENGTH 379 SQ:AASEQ MNYDFIITILDEHNESSILLAEKLKPKEIIYLYKKDEELKVLNSLRQFYLNKFPNCNFSDEKLGKDIISSIEEIIKRMKSKNTAICLNQGNKKDILIMYTLALKHNIDGFFLDIPKEELLKLNLESVQCEKCNFVDLDVEDIIDSIGASIVVDSTEISEINIIETMTNYIASNLDLWKKYKIRLSDNSVFIHDESNPRSIKIDKELLSREEVMLLDKILNFLEENGQIKVKELEQCLKVTFQNEFIKGFIFKSGTWLEVLTKNIIEEIKSIDDIKSGLLFLWNDKESRVKNELDVVAIKDSVLICVSCKDSKKYDEVALNELNVYSEQLGGENVIKILVATHHPIKSSISKRAKEMGINLVVFDGNKKAFKEELEKIIK GT:EXON 1|1-379:0| BL:SWS:NREP 1 BL:SWS:REP 277->344|EPTA_SALTY|8e-04|32.4|68/100| SEG 67->75|iissieeii| SEG 154->168|steiseiniietmtn| SEG 264->276|iieeiksiddiks| BL:PDB:NREP 1 BL:PDB:REP 201->361|1xmxA|3e-05|28.6|154/380| RP:PFM:NREP 1 RP:PFM:REP 19->371|PF09002|1e-10|28.1|331/353|DUF1887| HM:PFM:NREP 1 HM:PFM:REP 9->376|PF09002|5.3e-21|23.3|352/382|DUF1887| RP:SCP:NREP 1 RP:SCP:REP 203->379|1xmxA|8e-44|27.3|165/380|c.52.1.26| HM:SCP:REP 1->380|1xmxA_|6.7e-66|30.5|367/0|c.52.1.26|1/1|Restriction endonuclease-like| OP:NHOMO 5 OP:NHOMOORG 5 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-----111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 154 STR:RPRED 40.6 SQ:SECSTR ########################################################################################################################################################################################################ccEEEccHHHHcHHHHHHHHHHHH###TTcEEEETTE#EEEccHHHHHHH##HTTHHHHHHHHHHTTcTTEEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEccccccccHHHHHHHHHHHHHGGGcEEEEE#EcccccHHHHHHHHHHTcEEE################## DISOP:02AL 31-31,39-39,87-88,90-90,95-95,101-101,137-137,143-144,146-146,151-152,157-158,160-160,165-165,199-199,202-202| PSIPRED ccccEEEEEEEcccccEEEEEccccccEEEEEEcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEccccccEEEEEEEEEEEccccEEEEEccHHHHHHHccccEEEccccEEEccHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHcccHHHEEEEEEEcccEEEEEccccccEEEEHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHcccEEEEEcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHccEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccEEEEEEEccHHHHHHHHHHHcc //