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Clostridium perfringens str. 13 (cper0)
Gene : CPE0309
DDBJ      :CPE0309      probable transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  492/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:228 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->220 2di3B PDBj 4e-23 33.5 %
:RPS:PDB   11->228 1e2xA PDBj 3e-31 15.0 %
:RPS:SCOP  11->75 1e2xA1  a.4.5.6 * 7e-17 24.6 %
:RPS:SCOP  49->222 1e2xA2  a.78.1.1 * 2e-16 13.9 %
:HMM:SCOP  1->75 1v4rA1 a.4.5.6 * 6e-20 44.0 %
:RPS:PFM   12->73 PF00392 * GntR 2e-12 50.0 %
:RPS:PFM   98->222 PF07729 * FCD 2e-07 30.6 %
:HMM:PFM   98->222 PF07729 * FCD 1.9e-22 27.3 121/125  
:HMM:PFM   11->73 PF00392 * GntR 6.6e-21 50.8 63/64  
:BLT:SWISS 5->228 YCBG_BACSU 8e-31 32.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80015.1 GT:GENE CPE0309 GT:PRODUCT probable transcriptional regulator GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 392981..393667 GB:FROM 392981 GB:TO 393667 GB:DIRECTION + GB:GENE CPE0309 GB:PRODUCT probable transcriptional regulator GB:NOTE 228 aa, similar to sp:YCBG_BACSU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN GLTP-CWLJ INTERGENIC REGION (ORF6). from Bacillus subtilis (233 aa); 30.8% identity in 224 aa overlap GntR family GB:PROTEIN_ID BAB80015.1 LENGTH 228 SQ:AASEQ MFKPVKNMKVYEQVVDQIKEMVRVGQIKKGDKLPTERVMAEELQVSRTSIREAMRALEVVGLIESRQGAGNYIREEFDDVLLEPLSIVFMLQNGTNKDIFELREVLELSTIFLSVMRISDEELKKLGELVERFKTSRDEEENVKIDSEFHSIIVKGANNVLITNLLEGVSELVDKFISEGRRAILSDERNRGKLLDFHEKIYLAIKNRDAYSAYKHMQEHFQLIKENI GT:EXON 1|1-228:0| BL:SWS:NREP 1 BL:SWS:REP 5->228|YCBG_BACSU|8e-31|32.2|214/233| BL:PDB:NREP 1 BL:PDB:REP 7->220|2di3B|4e-23|33.5|212/230| RP:PDB:NREP 1 RP:PDB:REP 11->228|1e2xA|3e-31|15.0|214/222| RP:PFM:NREP 2 RP:PFM:REP 12->73|PF00392|2e-12|50.0|62/64|GntR| RP:PFM:REP 98->222|PF07729|2e-07|30.6|121/125|FCD| HM:PFM:NREP 2 HM:PFM:REP 98->222|PF07729|1.9e-22|27.3|121/125|FCD| HM:PFM:REP 11->73|PF00392|6.6e-21|50.8|63/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 11->75|1e2xA1|7e-17|24.6|65/73|a.4.5.6| RP:SCP:REP 49->222|1e2xA2|2e-16|13.9|137/149|a.78.1.1| HM:SCP:REP 1->75|1v4rA1|6e-20|44.0|75/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 1869 OP:NHOMOORG 505 OP:PATTERN ------1-11-11111----------------------------1-----------------1----- 1-1-5133334-1-32-22-22--3C2222244353-7AD11-3234-2--174C2-1----424268443----1------5-----11-------------1-211-4-----------------------------1-----2-----------------------2-------------3-1---1-1343333333333333439233143342431711111111222--------------1---11-------------------------1111111---------1-----------1------1----111128136222222212123332111431--12512AA1332-214-122-1---13222-----2-31---12--1-43433344447---2--3-18E1-DBB6ABBFGDEG463-14443254345--------111--2-2------------------------------113--27656777AA86333155HB43331396D768D23441113246282A6--3----111111111----12-4613222114111-212114312-----1-2---------------------------113134224352232314333442241433----1--------57544718558888888-5878999887588888889545542237384758777657546566488764-333333333333---------------275---1-1-1111-2215556424---513344577A477993684----------111311111223222221111-----------------------------------------------------------1-----1 --------------------------------------------------------------------------------------------------------------------------------------------------------------3-----------------------------3-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 228 STR:RPRED 100.0 SQ:SECSTR HcccccGGGHHHHHHHHHHHHHHTTcccTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTEEEEEccHHHHccGGGHHHHHHHcTTTHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHGGGTcccHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHTcGGGHHHHHHHHHHHHHHHH DISOP:02AL 1-12, 227-228| PSIPRED cccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHc //