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Clostridium perfringens str. 13 (cper0)
Gene : CPE0313
DDBJ      :CPE0313      probable glycolate oxidase subunit
Swiss-Prot:             

Homologs  Archaea  41/68 : Bacteria  659/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
d.145.1d.58.32
:466 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   39->464 2uuuB PDBj 2e-22 27.0 %
:RPS:PDB   2->465 1e8gA PDBj 2e-75 14.9 %
:RPS:SCOP  18->208 1ahuA2  d.145.1.1 * 1e-40 22.5 %
:RPS:SCOP  231->465 1f0xA1  d.58.32.2 * 1e-44 22.0 %
:HMM:SCOP  1->221 1diqA2 d.145.1.1 * 1.7e-65 46.1 %
:HMM:SCOP  224->465 1e8gA1 d.58.32.1 * 7.5e-59 38.8 %
:RPS:PFM   47->184 PF01565 * FAD_binding_4 3e-29 44.5 %
:RPS:PFM   231->463 PF02913 * FAD-oxidase_C 8e-41 41.2 %
:HMM:PFM   220->464 PF02913 * FAD-oxidase_C 2.4e-60 34.4 244/249  
:HMM:PFM   46->184 PF01565 * FAD_binding_4 1.2e-44 43.1 137/138  
:BLT:SWISS 34->464 GLCD_BACSU 3e-86 39.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80019.1 GT:GENE CPE0313 GT:PRODUCT probable glycolate oxidase subunit GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 397515..398915 GB:FROM 397515 GB:TO 398915 GB:DIRECTION + GB:GENE CPE0313 GB:PRODUCT probable glycolate oxidase subunit GB:NOTE 466 aa, similar to pir:D69984 glycolate oxidase subunit homolog ysfC from Bacillus subtilis (470 aa); 39.9% identity in 431 aa overlap. 2 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB80019.1 LENGTH 466 SQ:AASEQ MSYNKINESGIEFIKGIINDNERVFIGEEISEDYSHDELGSEKHMPDIVVKAMSRDEIVEIMKYANNNNIPVTVRGAGTGLVGAAVPILGGILLDLSGMNKILELDEDNLTLTVEPGVLIMEIAKFVEEHDLFYPPDPGEKTATIGGNVSTNAGGMRAVKYGVTRDYVRGIEVVLPSGEVLELGGKVVKNSSGYSLKDLIIGSEGTLGIITKIVLKLLPLPKKVISLLVPFNDLESAIETVPKIIKSKNIPTAIEFMQRDLIISAEEFLGKKFPDNSSNAYLILSFDGNSKEEVEGYYEKVADICLKEGALDVFISDTEERQESIWSARGAFLEAIKASTSDLDEVDVVVPRNKVAEFVKFTNEVEKKLNVRIRSFGHAGDGNLHIYILKDELSEDEWHKKLNEAMEILYRKQRELNGQVSGEHGIGLAKRLYLNESLNKATMDIMRGIKLAFDPNNILNPGKVCE GT:EXON 1|1-466:0| BL:SWS:NREP 1 BL:SWS:REP 34->464|GLCD_BACSU|3e-86|39.3|428/470| SEG 209->230|iitkivlkllplpkkvisllvp| BL:PDB:NREP 1 BL:PDB:REP 39->464|2uuuB|2e-22|27.0|396/540| RP:PDB:NREP 1 RP:PDB:REP 2->465|1e8gA|2e-75|14.9|462/550| RP:PFM:NREP 2 RP:PFM:REP 47->184|PF01565|3e-29|44.5|137/139|FAD_binding_4| RP:PFM:REP 231->463|PF02913|8e-41|41.2|228/242|FAD-oxidase_C| HM:PFM:NREP 2 HM:PFM:REP 220->464|PF02913|2.4e-60|34.4|244/249|FAD-oxidase_C| HM:PFM:REP 46->184|PF01565|1.2e-44|43.1|137/138|FAD_binding_4| GO:PFM:NREP 4 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01565|IPR006094| GO:PFM GO:0050660|"GO:FAD binding"|PF01565|IPR006094| GO:PFM GO:0003824|"GO:catalytic activity"|PF02913|IPR004113| GO:PFM GO:0050660|"GO:FAD binding"|PF02913|IPR004113| RP:SCP:NREP 2 RP:SCP:REP 18->208|1ahuA2|1e-40|22.5|191/268|d.145.1.1| RP:SCP:REP 231->465|1f0xA1|1e-44|22.0|214/237|d.58.32.2| HM:SCP:REP 1->221|1diqA2|1.7e-65|46.1|219/0|d.145.1.1|1/1|FAD-binding domain| HM:SCP:REP 224->465|1e8gA1|7.5e-59|38.8|232/0|d.58.32.1|1/1|FAD-linked oxidases, C-terminal domain| OP:NHOMO 2603 OP:NHOMOORG 890 OP:PATTERN 22-1-143345444441133221331111122----------------13221-------12113--1 125551-1----2-33344-432255545553322238D6145231121111143211--22514574321--------1-141111111---1-------211121212---------------2222222221266655---132432443222212122323232223-111---1-1--22233--131222222222223222353111222234413--------2------------------------1111----11--21------------------------------------------------------4-121111111212-122211131-1-1--2-461121--52--1--1-322311411111349663255664544444443447-45544B4846417445459656767432155554674452222222243332234-----------------------------11661165556877A794444577A9454443B7979781344476544958559444311-23111111145475415723335353555-332122222333346232--111111112211111111111133111-41212121111111211111121111---6224------21111114213434444-244444444424444444112111111111111111111111121121111--111111111111---1--111122222444111111-111111111111111342513333565445557434421212211111112222221122222222222232222112-332222--------1-1--------------------------11---2---421 ----432-741-2423465563456543333333333434444233444467BA4334344423324334225243313334446312-47443323332322433-32473345333112332842538K5-4351311323411313231133351569433322425335342333Y3322232164312386642 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 465 STR:RPRED 99.8 SQ:SECSTR HccHHHHHHHHHHHHHHHcGGGGEEEccccccccccccccTTcccccEEEccccHHHHHHHHHHHHHHTccEEEEcccccTTTTTTcccTcEEEEcTTcccEEEEETTTTEEEEcTTccHHHHHHHHHHTTcTTTEEcccccTTccHHHHHHTTcccccTTccTGGGEEEEEEEETTccEEEcGGGGcGGccccTTTTTcGGcccccEEEEEEEEEcEEccccEEEEEEEEccTTHHHHHHHHHHHHTTccccccEEEEHHHHHHHHccGGGTcccccccEEEEEEEEccHHHHHHHHHHHHHHHGTTcTTcEEEcGGGccTTcHHHHHHHHTTTccccGGGGGGGEEcccHHHHHHHHHHHHHHHHHHTccccEEEEEccccEEEEEEEEEETTcHHHHHHHHHHHHHHHHHHHTTcccccccGGGHHHHHHHTcHHHHHHHHHHHHHHHHHcTTccccTTGGG# DISOP:02AL 1-3| PSIPRED cccccccHHHHHHHHHHcccccEEEccHHHHHHHHcccccccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccEEEEHHHcccEEEEEccccEEEEEccccHHHHHHHHHHcccEEEccccccccccccccccccccccccccccHHEEEEEEEEEcccccEEEcccccccccccccHHHHHHcccccEEEEEEEEEEEEEcccEEEEEEEEEccHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHcccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccccHHHHHHHHccHHHHHHHHHHHHHHccccccccccccc //