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Clostridium perfringens str. 13 (cper0)
Gene : CPE0316
DDBJ      :CPE0316      probable transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  504/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.124.1d.58.5
:259 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   4->54 2acjB PDBj 2e-04 17.6 %
:RPS:PDB   39->255 3dlxB PDBj 3e-22 11.2 %
:RPS:SCOP  1->56 1h3dA2  d.58.5.3 * 1e-05 19.6 %
:RPS:SCOP  70->253 1t5oA  c.124.1.5 * 1e-19 10.8 %
:HMM:SCOP  2->56 1stzA1 a.4.5.51 * 5.2e-09 30.9 %
:HMM:SCOP  73->240 1m0sA1 c.124.1.4 * 2.4e-26 29.7 %
:RPS:PFM   24->60 PF08220 * HTH_DeoR 3e-05 48.6 %
:RPS:PFM   78->234 PF00455 * DeoR 3e-21 39.0 %
:HMM:PFM   78->234 PF00455 * DeoR 2e-40 39.6 154/157  
:HMM:PFM   6->58 PF08220 * HTH_DeoR 4.3e-12 32.1 53/57  
:BLT:SWISS 24->235 AGAR_ECOLI 2e-23 34.4 %
:PROS 6->40|PS00894|HTH_DEOR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80022.1 GT:GENE CPE0316 GT:PRODUCT probable transcriptional regulator GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(400516..401295) GB:FROM 400516 GB:TO 401295 GB:DIRECTION - GB:GENE CPE0316 GB:PRODUCT probable transcriptional regulator GB:NOTE 259 aa, similar to gpu:AP001510_1 transcriptional repressor from Bacillus halodurans (251 aa); 32.3% identity in 220 aa overlap GB:PROTEIN_ID BAB80022.1 LENGTH 259 SQ:AASEQ MLKQDRLMEITNIIQNKKRIQIKDLAKSTFSSISTIRRDVIFLEKQGLIKRLHGEIILNNFNTVEPSKFLRESENVIKKRAIASLAKDFIAPGMCIYLDSSTTVYELCPFLCDIEHLIIFTNGLNTALRLAEYGNPTMKIFITGGEVKHFSSSVVNLDIENSLLNHFNVDIAFCSARGIDESNVYEVSLSQAVSKKRIIDKAKETILLIDSSKFEVTGFFKINDLKKYKAIISDKLPSPKILAAAEALDIEWISDTDIS GT:EXON 1|1-259:0| BL:SWS:NREP 1 BL:SWS:REP 24->235|AGAR_ECOLI|2e-23|34.4|209/269| PROS 6->40|PS00894|HTH_DEOR_1|PDOC00696| SEG 10->23|itniiqnkkriqik| RP:PDB:NREP 2 RP:PDB:REP 4->54|2acjB|2e-04|17.6|51/65| RP:PDB:REP 39->255|3dlxB|3e-22|11.2|215/465| RP:PFM:NREP 2 RP:PFM:REP 24->60|PF08220|3e-05|48.6|37/56|HTH_DeoR| RP:PFM:REP 78->234|PF00455|3e-21|39.0|154/157|DeoR| HM:PFM:NREP 2 HM:PFM:REP 78->234|PF00455|2e-40|39.6|154/157|DeoR| HM:PFM:REP 6->58|PF08220|4.3e-12|32.1|53/57|HTH_DeoR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF08220|IPR001034| GO:PFM GO:0005622|"GO:intracellular"|PF08220|IPR001034| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08220|IPR001034| RP:SCP:NREP 2 RP:SCP:REP 1->56|1h3dA2|1e-05|19.6|56/68|d.58.5.3| RP:SCP:REP 70->253|1t5oA|1e-19|10.8|176/340|c.124.1.5| HM:SCP:REP 2->56|1stzA1|5.2e-09|30.9|55/87|a.4.5.51|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 73->240|1m0sA1|2.4e-26|29.7|145/148|c.124.1.4|1/1|NagB/RpiA/CoA transferase-like| OP:NHOMO 1630 OP:NHOMOORG 508 OP:PATTERN ------------------------2------------------------------------------- 31--6-12--111--------2---2------111112231--14---11--4331-3--113233534321---1111---1--------1--------1---13-4-4--------------------------22211----------------------------1-------------3----22-3142222222313222225544242331112322666666592222222222222224322342-1471-32255--671411--3423343333332444444444444444444444444432221333551176221232252312--24422211-1121----1--1--32225221--12--------1-1-2----2-1144444444444---1--11118--7333324865442----32-2112211111111114112---2-------------------------------1---111112333322222222322222123222222--1111-1-11-1111-------311-11111--------1---12--1---1--------------1-----------------------------3241---1-121-------111---------------------7544462876A8AAA88-79887988787B888898388834432B8CBCBCBBABBABBB765588763-555555445555---------------1-6222535123223775----------2-22122311111122234----------333422222111451111111----------3---------------------1---2-1------21-------4---12111--- -------------1-----------------------------------------------------------------------------------------------------------------------------------------------------1------4---------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 255 STR:RPRED 98.5 SQ:SECSTR ccccHHHHHHHHHHHHcccccHHHHHHHHTccHHHHHHcTTcccGGGccccGGGccEEEEcccccccccccccccHHHHHHHHHHGGHGccTTEEEEEcTTHHHHHGGGccTTccEEEEEETTTEEEEcccccGGccTTcccTTcccccEEEEEEEccHHHHHHHTTcccEEEEcccEEETccccTTcccccTTHHHHTccTTcEEEEEGEEcEEccccccccccccccEEEcccEEEEEEEEEcTTccHHHHHH#### DISOP:02AL 1-4, 258-259| PSIPRED ccHHHHHHHHHHHHHHcccEEHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHccccEEEEEccHHHHHHHHHcccccEEEEEEccEEEccccEEEcHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccEEEEccccccEEEEcccccHHHHHHHHHcccEEEcccccc //