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Clostridium perfringens str. 13 (cper0)
Gene : CPE0334
DDBJ      :CPE0334      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  39/68 : Bacteria  160/915 : Eukaryota  40/199 : Viruses  0/175   --->[See Alignment]
b.82.5
:187 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->159 1yoxD PDBj 2e-47 54.5 %
:RPS:SCOP  13->161 1pg6A  b.82.5.2 * 5e-38 30.4 %
:HMM:SCOP  1->171 1yoxA1 b.82.5.2 * 4e-53 46.5 %
:RPS:PFM   14->149 PF01987 * DUF124 5e-22 49.6 %
:HMM:PFM   11->150 PF01987 * DUF124 2.6e-47 41.6 137/215  
:BLT:SWISS 13->164 Y233_STRP6 9e-12 30.6 %
:REPEAT 2|33->85|97->149

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80040.1 GT:GENE CPE0334 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 422038..422601 GB:FROM 422038 GB:TO 422601 GB:DIRECTION + GB:GENE CPE0334 GB:PRODUCT conserved hypothetical protein GB:NOTE 187 aa, some similarity to gpu:AB018117_28 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5 from Arabidopsis thaliana (268 aa); 37.6% identity in 125 aa overlap GB:PROTEIN_ID BAB80040.1 LENGTH 187 SQ:AASEQ MTAFTNMGVEREKVAFASPYPGKIIPVDLRNYGGKLICQKDAFICAAKGVSIGIDFRRKLGTGFFGGEGFILQKLEGDGMAFIHAGGTIVRKRLLPGQKLKVDTGCLVAMTKDVNYDIEYVKGIKNAVFGGEGIFFASLVGPGEVWIQSLPFSRLASKVVSSAPQVPGSRDVGEGSVLGEFGRLFQD GT:EXON 1|1-187:0| BL:SWS:NREP 1 BL:SWS:REP 13->164|Y233_STRP6|9e-12|30.6|147/100| NREPEAT 1 REPEAT 2|33->85|97->149| BL:PDB:NREP 1 BL:PDB:REP 2->159|1yoxD|2e-47|54.5|156/204| RP:PFM:NREP 1 RP:PFM:REP 14->149|PF01987|5e-22|49.6|133/209|DUF124| HM:PFM:NREP 1 HM:PFM:REP 11->150|PF01987|2.6e-47|41.6|137/215|DUF124| RP:SCP:NREP 1 RP:SCP:REP 13->161|1pg6A|5e-38|30.4|138/216|b.82.5.2| HM:SCP:REP 1->171|1yoxA1|4e-53|46.5|170/0|b.82.5.2|1/1|TRAP-like| OP:NHOMO 264 OP:NHOMOORG 239 OP:PATTERN ------1111111111-1-----1111111----11-1-1-1--1-1111111-1--11-11111--- 1-11----------------------------------------1-----------------1------------------------------------1-1-111-11-------------------------1-11122---1-111-11------------------1--------------------1--11111111-111111------111-111----------11--------------------1---------------------------1111111-----------1111111111111211---1111-1111----------1----111-------11-1-11----1--------1--1111------------------------------------------------------1---1------------------------1--------------------------------1-----------------------------------------11----------------1-----------------1---1----------1----111111---------------------------1-------------1111111-1111-1--1-1---------------------------------------------------------------------------------------------------------------2---------------------------1-1111----1----1111------------------------1111111111------1---1122--------1---------------------------1--111-1-1-1- ----11---------11-1--1-------11-1111-111-111-1------1-1-------------------------------------1---------------4-------------------------------------------------------------------3-13111---122-2152-1114 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 157 STR:RPRED 84.0 SQ:SECSTR #EEEEEcccccEEEEEcccccEEEEEEEGGGGTTEEEEETTTEEEEETTcEEEEEEEEcccccccTTccEEEEEEEcccEEEEEEEccEEE#EEEEEEEEEEEGGGEEEEcccEEEEEEEcTTccEccTTTcccEEEEEEEEEEEEEEcccHHHHHHHH############################ DISOP:02AL 160-179| PSIPRED cEEEEccccccEEEEEcccccccEEEEEEcccccEEEEEcccEEEEEccEEEEEEEcccccccccccccEEEEEEEEEEEEEEEccccEEEEEEccccEEEEEccEEEEEEccccEEEEEcccHHHHHccccEEEEEEEEEcEEEEEEEccHHHHHHHHHHHccccccccccccEEEEHHHHHHHcc //