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Clostridium perfringens str. 13 (cper0)
Gene : CPE0337
DDBJ      :CPE0337      probable amino acid transporter
Swiss-Prot:             

Homologs  Archaea  34/68 : Bacteria  592/915 : Eukaryota  174/199 : Viruses  0/175   --->[See Alignment]
:460 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->387 3gi9C PDBj 1e-21 25.2 %
:RPS:PFM   31->441 PF00324 * AA_permease 2e-31 32.9 %
:HMM:PFM   29->422 PF00324 * AA_permease 3.9e-46 26.1 379/479  
:BLT:SWISS 3->456 YFNA_BACSU 2e-85 40.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80043.1 GT:GENE CPE0337 GT:PRODUCT probable amino acid transporter GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 425340..426722 GB:FROM 425340 GB:TO 426722 GB:DIRECTION + GB:GENE CPE0337 GB:PRODUCT probable amino acid transporter GB:NOTE 460 aa, similar to gp:BCE237785_5 putative amino acid transporter from Bacillus cereus (471 aa); 44.1% identity in 454 aa overlap. 11 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB80043.1 LENGTH 460 SQ:AASEQ MEIFKKQSLKRILSEANENKERTLSALDLTLMSVGSVIGTGVMVLTGIVAAKQSGPATSIAFIGGGIAAAIIVLCYAEFSSSIPSAGGSYSFTYVSLGEIIAYISGLCIVIGYTLSTATVASGWGAYLLSLLDILGIKLPKTFTAIPSEGGIVNLPAMISILFIVFVISLGTKESKKVNDIMVFIKIVVIALFIGVGAFHVNTSNWHPFAPFGVKGIVTGTASLFFAYCGFDATASAAEEVKNPQKSLPLGLISSLVICTIIYIAVSLVLTGVTSYTNLNVGDALSYALKLVGQRGVAFVVSLGTVIGILAVIFAGNFTTSHILLAMSRDGLLPKFFSKVDKKDVPYTALWTVGIIGALLAGFFNLGQLANFANIAFLLTYTLVCISLIAFRKKYPHVKRGFKTPLVPFIPLLGAFSCLFLMSNLSEETWKIFIVVLVLLITSYLVYGRKHSLINKNNDN GT:EXON 1|1-460:0| BL:SWS:NREP 1 BL:SWS:REP 3->456|YFNA_BACSU|2e-85|40.7|454/461| TM:NTM 10 TM:REGION 27->49| TM:REGION 57->79| TM:REGION 106->128| TM:REGION 152->174| TM:REGION 179->200| TM:REGION 250->272| TM:REGION 306->328| TM:REGION 345->367| TM:REGION 370->391| TM:REGION 414->436| SEG 60->72|iafigggiaaaii| SEG 80->91|sssipsaggsys| SEG 128->139|llslldilgikl| BL:PDB:NREP 1 BL:PDB:REP 18->387|3gi9C|1e-21|25.2|353/437| RP:PFM:NREP 1 RP:PFM:REP 31->441|PF00324|2e-31|32.9|398/429|AA_permease| HM:PFM:NREP 1 HM:PFM:REP 29->422|PF00324|3.9e-46|26.1|379/479|AA_permease| GO:PFM:NREP 3 GO:PFM GO:0006810|"GO:transport"|PF00324|IPR004841| GO:PFM GO:0016020|"GO:membrane"|PF00324|IPR004841| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00324|IPR004841| OP:NHOMO 3799 OP:NHOMOORG 800 OP:PATTERN ---1--21-------1121----123324215--1-1------31-12-34341---1-1-5751--1 465232--11222-52243-443394444445366625ED----2131-221B7B525----2433F94512222322---13-1111111112-----3-431-62533--------------111111--21-2------------------------------1-----------1-----------182CCCCCCBAC9ABADBB2166CEBCA534618144444332554555545555555344372881451754888CC53668354122--121112111111111111122222222222222222222221-11425656666-5--5552322-1--1-112122--1-1115--41---3--222223121331-----11---21122221111-33133142-----11--21---331-11-----------6666666623332-------------112111122122221-----112221---17AA9A74434299424444169625463-2223-11--21-11-----11243-------111-----------3-----1------11-----11-----1------------------13111-111-11---123333-112121-2111-1--11---------67557648776866676-7797766767766777776777565547677777777777777955466661-755455455555--2-5454347651-122--------1-1-111GGHGDB9----1786789672BDAA113342121211221-1-1111121-1144566666683333----221111--------2----------------------------1--------1-1 ----44----1-65143--3-1147443323332122222212---356555751241133445134216424343426645645223-112322311--4-16581---LRXDLMJ87569G7LH5E8UwG2FDH4853U8AQE49566S85G6EDGFHa*7CB75KACTA8A4122-711144CBDQ-B914C8CB- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 428 STR:RPRED 93.0 SQ:SECSTR #################ccccccccHHHHHHHHHHHHHHHHTTTTHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHTTTcccTTTHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTccccc####cHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHccccHHHHHHHHHHHHHTTGGGTHHHHHHTTGGGcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHTTHHHHHTHHHcHHHH#HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHccccccccTcccccTcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccTTcccHHHHHHHHHHHHHHHHHHcTTHHHHHH#HHHHHHHHHTTTccccccc######### DISOP:02AL 1-2, 5-25, 451-460| PSIPRED cccccccccHHHHccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc //