[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : CPE0366
DDBJ      :CPE0366      probable transcription regulator
Swiss-Prot:             

Homologs  Archaea  45/68 : Bacteria  569/915 : Eukaryota  142/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.67.1
:520 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->98 3by6C PDBj 2e-09 27.8 %
:BLT:PDB   163->467 1x0mA PDBj 1e-35 30.6 %
:RPS:PDB   11->78 1e2xA PDBj 1e-19 26.5 %
:RPS:PDB   107->462 3cbfA PDBj 1e-27 23.2 %
:RPS:SCOP  11->76 1e2xA1  a.4.5.6 * 1e-18 27.3 %
:RPS:SCOP  133->462 1vp4A  c.67.1.1 * 1e-31 23.1 %
:HMM:SCOP  5->78 1v4rA1 a.4.5.6 * 7.9e-17 43.2 %
:HMM:SCOP  102->521 1x0mA1 c.67.1.1 * 3.8e-74 24.9 %
:RPS:PFM   16->76 PF00392 * GntR 2e-10 47.5 %
:RPS:PFM   168->469 PF00155 * Aminotran_1_2 3e-22 26.3 %
:HMM:PFM   159->504 PF00155 * Aminotran_1_2 1.2e-29 22.5 315/363  
:HMM:PFM   14->76 PF00392 * GntR 1.1e-18 46.0 63/64  
:BLT:SWISS 5->479 YDFD_BACSU 4e-44 27.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80072.1 GT:GENE CPE0366 GT:PRODUCT probable transcription regulator GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 468439..470001 GB:FROM 468439 GB:TO 470001 GB:DIRECTION + GB:GENE CPE0366 GB:PRODUCT probable transcription regulator GB:NOTE 520 aa, similar to pir:B69780 transcription regulator GntR family homolog ydfD from Bacillus subtilis (482 aa); 26.7% identity in 475 aa overlap GntR family GB:PROTEIN_ID BAB80072.1 LENGTH 520 SQ:AASEQ MFKNLTFNENEKKYIQIARYIRELINRGVLIEGSKLPSSREISSILSIGRNTIMSAYEILESEGLVETIKGKGTFVKKEFSNEKSNKVSSMKKENSEIKEDNKWNIDWKYKTNEYGVLAESLDIIKSEEKWEKGMISFKSIAPPGNLFNIEELKRSFSNRIALEKHKIVNYGYAVGYKPFIDYLKDYMKEKGAYSEEKEVIVTNGFTEGLDMMLSAFTKEGDYIFCENPTHNTALKIMKTHKLNIIGVEMTKDGMDIEDLNKKIKKFGEKIKFSYLIPSYHNPTGVVASIKKREEVYNVLKDAGIPIIEDGFNEELLYESSPTIPLASLDRESNGVIYIGSFSKILFPGLRIGWVYGDKKIIGILESVKRCRNIHTSFLDQGILYDFMISGAFEKYIKKVRKVYKEKYKFTKSVIEKYIKEAEIWGEGGLYMFLKIKGVDTRELLKRCYDRGVLFMPGDLFYIDKDLYLEKENRVFSLEGHNIKGREKRDTLRIGFTRLSEEEIEKGIKIIGEEVKSILT GT:EXON 1|1-520:0| BL:SWS:NREP 1 BL:SWS:REP 5->479|YDFD_BACSU|4e-44|27.7|452/482| SEG 262->273|kkikkfgekikf| SEG 394->409|ekyikkvrkvykekyk| SEG 501->514|eeeiekgikiigee| BL:PDB:NREP 2 BL:PDB:REP 2->98|3by6C|2e-09|27.8|97/120| BL:PDB:REP 163->467|1x0mA|1e-35|30.6|304/403| RP:PDB:NREP 2 RP:PDB:REP 11->78|1e2xA|1e-19|26.5|68/222| RP:PDB:REP 107->462|3cbfA|1e-27|23.2|349/392| RP:PFM:NREP 2 RP:PFM:REP 16->76|PF00392|2e-10|47.5|61/64|GntR| RP:PFM:REP 168->469|PF00155|3e-22|26.3|297/341|Aminotran_1_2| HM:PFM:NREP 2 HM:PFM:REP 159->504|PF00155|1.2e-29|22.5|315/363|Aminotran_1_2| HM:PFM:REP 14->76|PF00392|1.1e-18|46.0|63/64|GntR| GO:PFM:NREP 6 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| GO:PFM GO:0009058|"GO:biosynthetic process"|PF00155|IPR004839| GO:PFM GO:0016769|"GO:transferase activity, transferring nitrogenous groups"|PF00155|IPR004839| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00155|IPR004839| RP:SCP:NREP 2 RP:SCP:REP 11->76|1e2xA1|1e-18|27.3|66/73|a.4.5.6| RP:SCP:REP 133->462|1vp4A|1e-31|23.1|329/420|c.67.1.1| HM:SCP:REP 5->78|1v4rA1|7.9e-17|43.2|74/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 102->521|1x0mA1|3.8e-74|24.9|394/0|c.67.1.1|1/1|PLP-dependent transferases| OP:NHOMO 2461 OP:NHOMOORG 756 OP:PATTERN 11211232444444222411111---------------1111111-12--1---11111221111--1 123-6-------1-1------1---5------11212365121212111221333212--332252463611---11111-12----------2-------4---615-1----------------1-111-11--22233---33-------1111-------1--112-------------21211211--6AABABCBD7CCBBCA556558ADC2119311322222H5122121222222222222251-221121---3333112--231--111111111221111-111111-------------111111111117337CCCBCCD5A5265533335711112---22-3--13-1111113----1111------1754-1-3113122222222125-12122311281-5441323355343-1--3162-1323922222222-11----3--------------------------------1-2A976BJFHHHKCAAA8JJKLBBBB49KDEDBDB--89744322E86596361133363---------1-32-1--1132122543-312---11-122246--3--------------------1--1--421-213--12-4222--12122--1-2-3---1-1-------45841762443222212-42124122224331121158888712131343333332333439-13---1--633333133333-------------1-736111---1-------177676441212298989A8A7ABB73446----------111311111456542222122111------1322----------------------------------------1322111111-2- ----33------112-23121112121232222221222222211121131233---121--2-11-21311221-1--112112-12-33-221141311-1313-11-2121112-----1-21-2-342-11111-111111-11-11----11123452341-121E--311-1-5----12--51---131222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 500 STR:RPRED 96.2 SQ:SECSTR HcccccccccccccccEEccccccccEEEEEEETTcHHHHHHHHTTcccccEEEEEcccTTccHHHHTTccccHHHHcccccHHHTTccHHHHHHHHHcccTTTcccHHHHcHHHHHccccHHHHHHHHHTcTTcEEEccccccGGGccHHHHHHHHHHHHHHHHHHHTccccTTccHHHHHHHHHHHTccGGcccGGGEEEEccHHHHHHHHHHHHccTTcEEEEEEcccHHHHHHHHTTccEEEEEEEETTEEcHHHHHHHHHHcccccEETEEcccccTTTcccccHHHHHHHHHHHHHHTccEEEEcTTTTccccccccccHHHHHHTcccEEEEEEcTTTTccTTccEEEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHccTTcEEcccccccEEEEETTccHHHHHHHHHHTTEEEEEcGGGccGGGTTEccEEEEEcccEETTcccccccEEEEEccTTc#################### DISOP:02AL 5-7, 85-100| PSIPRED ccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHccEEEEEccccEEEccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEccccccccccccHHHHHHHHHHHHHHccHHHHccccccccHHHHHHHHHHHHHccccccHHcEEEEccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccHHHcccccccEEEEccHHHHHHHHHHHEEEEccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHHcccEEEEcccccccccccccHHHHHcccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHcc //